MAZZAMUTO, GIACOMO
MAZZAMUTO, GIACOMO
Istituto Nazionale di Ottica - INO - Sede Secondaria di Sesto Fiorentino
Deep learning-based localization algorithms on fluorescence human brain 3D reconstruction: a comparative study using stereology as a reference
2024 Checcucci, C.; Wicinski, B.; Mazzamuto, G.; Scardigli, M.; Ramazzotti, J.; Brady, N.; Pavone, F. S.; Hof, P. R.; Costantini, I.; Frasconi, P.
Mapping brain state-dependent sensory responses across the mouse cortex
2024 Montagni, E.; Resta, F.; Tort-Colet, N.; Scaglione, A.; Mazzamuto, G.; Destexhe, A.; Pavone, F. S.; Allegra Mascaro, A. L.
Non-self-similar light transport in scattering media
2024 Pini, E.; Mazzamuto, G.; Riboli, F.; Wiersma, D. S.; Pattelli, L.
Optical Clearing and Labeling for Light-sheet Fluorescence Microscopy in Large-scale Human Brain Imaging
2024 Di Meo, Danila; Ramazzotti, Josephine; Scardigli, Marina; Cheli, Franco; Pesce, Luca; Brady, Niamh; Mazzamuto, Giacomo; Costantini, Irene; Pavone, Francesco S.
Segmentation of supragranular and infragranular layers in ultra-high-resolution 7T ex vivo MRI of the human cerebral cortex
2024 Zeng, X.; Puonti, O.; Sayeed, A.; Herisse, R.; Mora, J.; Evancic, K.; Varadarajan, D.; Balbastre, Y.; Costantini, I.; Scardigli, M.; Ramazzotti, J.; Dimeo, D.; Mazzamuto, G.; Pesce, L.; Brady, N.; Cheli, F.; Pavone, F. S.; Hof, P. R.; Frost, R.; Augustinack, J.; van der Kouwe, A.; Iglesias, J. E.; Fischl, B.
The past, present, and future of the brain imaging data structure (BIDS)
2024 Poldrack, Russell A.; Markiewicz, Christopher J.; Appelhoff, Stefan; Ashar, Yoni K.; Auer, Tibor; Baillet, Sylvain; Bansal, Shashank; Beltrachini, Leandro; Benar, Christian G.; Bertazzoli, Giacomo; Bhogawar, Suyash; Blair, Ross W.; Bortoletto, Marta; Boudreau, Mathieu; Brooks, Teon L.; Calhoun, Vince D.; Castelli, Filippo Maria; Clement, Patricia; Cohen, Alexander L.; Cohen-Adad, Julien; D'Ambrosio, Sasha; de Hollander, Gilles; de la Iglesia-Vayá, María; de la Vega, Alejandro; Delorme, Arnaud; Devinsky, Orrin; Draschkow, Dejan; Duff, Eugene Paul; Dupre, Elizabeth; Earl, Eric; Esteban, Oscar; Feingold, Franklin W.; Flandin, Guillaume; Galassi, Anthony; Gallitto, Giuseppe; Ganz, Melanie; Gau, Rémi; Gholam, James; Ghosh, Satrajit S.; Giacomel, Alessio; Gillman, Ashley G.; Gleeson, Padraig; Gramfort, Alexandre; Guay, Samuel; Guidali, Giacomo; Halchenko, Yaroslav O.; Handwerker, Daniel A.; Hardcastle, Nell; Herholz, Peer; Hermes, Dora; Honey, Christopher J.; Innis, Robert B.; Ioanas, Horea-Ioan; Jahn, Andrew; Karakuzu, Agah; Keator, David B.; Kiar, Gregory; Kincses, Balint; Laird, Angela R.; Lau, Jonathan C.; Lazari, Alberto; Legarreta, Jon Haitz; Li, Adam; Li, Xiangrui; Love, Bradley C.; Lu, Hanzhang; Marcantoni, Eleonora; Maumet, Camille; Mazzamuto, Giacomo; Meisler, Steven L.; Mikkelsen, Mark; Mutsaerts, Henk; Nichols, Thomas E.; Nikolaidis, Aki; Nilsonne, Gustav; Niso, Guiomar; Norgaard, Martin; Okell, Thomas W.; Oostenveld, Robert; Ort, Eduard; Park, Patrick J.; Pawlik, Mateusz; Pernet, Cyril R.; Pestilli, Franco; Petr, Jan; Phillips, Christophe; Poline, Jean-Baptiste; Pollonini, Luca; Raamana, Pradeep Reddy; Ritter, Petra; Rizzo, Gaia; Robbins, Kay A.; Rockhill, Alexander P.; Rogers, Christine; Rokem, Ariel; Rorden, Chris; Routier, Alexandre; Saborit-Torres, Jose Manuel; Salo, Taylor; Schirner, Michael; Smith, Robert E.; Spisak, Tamas; Sprenger, Julia; Swann, Nicole C.; Szinte, Martin; Takerkart, Sylvain; Thirion, Bertrand; Thomas, Adam G.; Torabian, Sajjad; Varoquaux, Gael; Voytek, Bradley; Welzel, Julius; Wilson, Martin; Yarkoni, Tal; Gorgolewski, Krzysztof J.
A cellular resolution atlas of Broca's area
2023 Costantini, I.; Morgan, L.; Yang, J.; Balbastre, Y.; Varadarajan, D.; Pesce, L.; Scardigli, M.; Mazzamuto, G.; Gavryusev, V.; Castelli, F. M.; Roffilli, M.; Silvestri, L.; Laffey, J.; Raia, S.; Varghese, M.; Wicinski, B.; Chang, S.; Chen, I. A.; Wang, H.; Cordero, D.; Vera, M.; Nolan, J.; Nestor, K.; Mora, J.; Iglesias, J. E.; Pallares, E. G.; Evancic, K.; Augustinack, J. C.; Fogarty, M.; Dalca, A. V.; Frosch, M. P.; Magnain, C.; Frost, R.; van der Kouwe, A.; Chen, S. -C.; Boas, D. A.; Pavone, F. S.; Fischl, B.; Hof, P. R.
A Guide to Perform 3D Histology of Biological Tissues with Fluorescence Microscopy
2023 Laurino, Annunziatina; Franceschini, Alessandra; Pesce, Luca; Cinci, Lorenzo; Montalbano, Alberto; Mazzamuto, Giacomo; Sancataldo, Giuseppe; Nesi, Gabriella; Costantini, Irene; Silvestri, Ludovico; Pavone, FRANCESCO SAVERIO
Brain-wide neuron quantification toolkit reveals strong sexual dimorphism in the evolution of fear memory
2023 Franceschini, Alessandra; Mazzamuto, Giacomo; Checcucci, Curzio; Chicchi, Lorenzo; Fanelli, Duccio; Costantini, Irene; Passani, Maria Beatrice; Silva, Bianca Ambrogina; Pavone, Francesco Saverio; Silvestri, Ludovico
Fiber enhancement and 3D orientation analysis in label-free two-photon fluorescence microscopy
2023 Sorelli, Michele; Costantini, Irene; Bocchi, Leonardo; Axer, Markus; Pavone, FRANCESCO SAVERIO; Mazzamuto, Giacomo
High-speed light-sheet microscopy imaging and data post-processing using custom hardware and software solutions
2023 Mazzamuto, G.; Silvestri, L.; Sancataldo, G.; Gavryusev, V.; Scardigli, M.; Costantini, I.; Pavone, F. S.
3D molecular phenotyping of cleared human brain tissues with light-sheet fluorescence microscopy
2022 Pesce, Luca; Scardigli, Marina; Gavryusev, Vladislav; Laurino, Annunziatina; Mazzamuto, Giacomo; Brady, Niamh; Sancataldo, Giuseppe; Silvestri, Ludovico; Destrieux, Christophe; Hof, Patrick R.; Costantini, Irene; Pavone, Francesco S.
Experimental imaging and Monte Carlo modeling of ultrafast pulse propagation in thin scattering slabs
2022 Pattelli, Lorenzo; Mazzamuto, Giacomo
Fast whole-brain imaging of seizures in zebrafish larvae by two-photon light-sheet microscopy
2022 De Vito, Giuseppe; Turrini, Lapo; Müllenbroich, Caroline; Ricci, Pietro; Sancataldo, Giuseppe; Mazzamuto, Giacomo; Tiso, Natascia; Sacconi, Leonardo; Fanelli, Duccio; Silvestri, Ludovico; Vanzi, Francesco; Pavone, Francesco Saverio
Microscopy-BIDS: An Extension to the Brain Imaging Data Structure for Microscopy Data
2022 Bourget Marie, Hélène; Kamentsky, Lee; Ghosh Satrajit, S; Mazzamuto, Giacomo; Lazari, Alberto; Markiewicz Christopher, J; Oostenveld, Robert; Niso, Guiomar; Halchenko Yaroslav, O; Lipp, Ilona; Takerkart, Sylvain; Toussaint Paule, Joanne; Khan Ali, R; Nilsonne, Gustav; Castelli Filippo, Maria; The BIDS, Maintainers; Cohenadad, Julien
Studying the trafficking of labeled trodusquemine and its application as nerve marker for light-sheet and expansion microscopy
2022 Capitini, Claudia; Pesce, Luca; Fani, Giulia; Mazzamuto, Giacomo; Genovese, Massimo; Franceschini, Alessandra; Paoli, Paolo; Pieraccini, Giuseppe; Zasloff, Michael; Chiti, Fabrizio; Pavone Francesco, S; Calamai, Martino
Autofluorescence enhancement for label-free imaging of myelinated fibers in mammalian brains
2021 Costantini, I; Baria, E; Sorelli, M; Matuschke, F; Giardini, F; Menzel, M; Mazzamuto, G; Silvestri, L; Cicchi, R; Amunts, K; Axer, M; Pavone, Fs
Comparison of Different Tissue Clearing Methods for Three-Dimensional Reconstruction of Human Brain Cellular Anatomy Using Advanced Imaging Techniques
2021 Scardigli, Marina; Pesce, Luca; Brady, Niamh; Mazzamuto, Giacomo; Gavryusev, Vladislav; Silvestri, Ludovico; Hof Patrick, R; Destrieux, Christophe; Costantini, Irene; Pavone Francesco, S
Large-scale, cell-resolution volumetric mapping allows layer-specific investigation of human brain cytoarchitecture
2021 Costantini, Irene; Mazzamuto, Giacomo; Roffilli, Matteo; Laurino, Annunziatina; Castelli Filippo, Maria; Neri, Mattia; Lughi, Giovanni; Simonetto, Andrea; Lazzeri, Erica; Pesce, Luca; Destrieux, Christophe; Silvestri, Ludovico; Conti, Valerio; Guerrini, Renzo; Pavone, FRANCESCO SAVERIO
Universal autofocus for quantitative volumetric microscopy of whole mouse brains
2021 Silvestri, L; Mullenbroich, M C; Costantini, I; Di Giovanna, A P; Mazzamuto, G; Franceschini, A; Kutra, D; Kreshuk, A; Checcucci, C; Toresano, L O; Frasconi, P; Sacconi, L; Pavone, FRANCESCO SAVERIO
| Titolo | Data di pubblicazione | Autore(i) | File |
|---|---|---|---|
| Deep learning-based localization algorithms on fluorescence human brain 3D reconstruction: a comparative study using stereology as a reference | 1-gen-2024 | Checcucci, C.; Wicinski, B.; Mazzamuto, G.; Scardigli, M.; Ramazzotti, J.; Brady, N.; Pavone, F. S.; Hof, P. R.; Costantini, I.; Frasconi, P. | |
| Mapping brain state-dependent sensory responses across the mouse cortex | 1-gen-2024 | Montagni, E.; Resta, F.; Tort-Colet, N.; Scaglione, A.; Mazzamuto, G.; Destexhe, A.; Pavone, F. S.; Allegra Mascaro, A. L. | |
| Non-self-similar light transport in scattering media | 1-gen-2024 | Pini, E.; Mazzamuto, G.; Riboli, F.; Wiersma, D. S.; Pattelli, L. | |
| Optical Clearing and Labeling for Light-sheet Fluorescence Microscopy in Large-scale Human Brain Imaging | 1-gen-2024 | Di Meo, Danila; Ramazzotti, Josephine; Scardigli, Marina; Cheli, Franco; Pesce, Luca; Brady, Niamh; Mazzamuto, Giacomo; Costantini, Irene; Pavone, Francesco S. | |
| Segmentation of supragranular and infragranular layers in ultra-high-resolution 7T ex vivo MRI of the human cerebral cortex | 1-gen-2024 | Zeng, X.; Puonti, O.; Sayeed, A.; Herisse, R.; Mora, J.; Evancic, K.; Varadarajan, D.; Balbastre, Y.; Costantini, I.; Scardigli, M.; Ramazzotti, J.; Dimeo, D.; Mazzamuto, G.; Pesce, L.; Brady, N.; Cheli, F.; Pavone, F. S.; Hof, P. R.; Frost, R.; Augustinack, J.; van der Kouwe, A.; Iglesias, J. E.; Fischl, B. | |
| The past, present, and future of the brain imaging data structure (BIDS) | 1-gen-2024 | Poldrack, Russell A.; Markiewicz, Christopher J.; Appelhoff, Stefan; Ashar, Yoni K.; Auer, Tibor; Baillet, Sylvain; Bansal, Shashank; Beltrachini, Leandro; Benar, Christian G.; Bertazzoli, Giacomo; Bhogawar, Suyash; Blair, Ross W.; Bortoletto, Marta; Boudreau, Mathieu; Brooks, Teon L.; Calhoun, Vince D.; Castelli, Filippo Maria; Clement, Patricia; Cohen, Alexander L.; Cohen-Adad, Julien; D'Ambrosio, Sasha; de Hollander, Gilles; de la Iglesia-Vayá, María; de la Vega, Alejandro; Delorme, Arnaud; Devinsky, Orrin; Draschkow, Dejan; Duff, Eugene Paul; Dupre, Elizabeth; Earl, Eric; Esteban, Oscar; Feingold, Franklin W.; Flandin, Guillaume; Galassi, Anthony; Gallitto, Giuseppe; Ganz, Melanie; Gau, Rémi; Gholam, James; Ghosh, Satrajit S.; Giacomel, Alessio; Gillman, Ashley G.; Gleeson, Padraig; Gramfort, Alexandre; Guay, Samuel; Guidali, Giacomo; Halchenko, Yaroslav O.; Handwerker, Daniel A.; Hardcastle, Nell; Herholz, Peer; Hermes, Dora; Honey, Christopher J.; Innis, Robert B.; Ioanas, Horea-Ioan; Jahn, Andrew; Karakuzu, Agah; Keator, David B.; Kiar, Gregory; Kincses, Balint; Laird, Angela R.; Lau, Jonathan C.; Lazari, Alberto; Legarreta, Jon Haitz; Li, Adam; Li, Xiangrui; Love, Bradley C.; Lu, Hanzhang; Marcantoni, Eleonora; Maumet, Camille; Mazzamuto, Giacomo; Meisler, Steven L.; Mikkelsen, Mark; Mutsaerts, Henk; Nichols, Thomas E.; Nikolaidis, Aki; Nilsonne, Gustav; Niso, Guiomar; Norgaard, Martin; Okell, Thomas W.; Oostenveld, Robert; Ort, Eduard; Park, Patrick J.; Pawlik, Mateusz; Pernet, Cyril R.; Pestilli, Franco; Petr, Jan; Phillips, Christophe; Poline, Jean-Baptiste; Pollonini, Luca; Raamana, Pradeep Reddy; Ritter, Petra; Rizzo, Gaia; Robbins, Kay A.; Rockhill, Alexander P.; Rogers, Christine; Rokem, Ariel; Rorden, Chris; Routier, Alexandre; Saborit-Torres, Jose Manuel; Salo, Taylor; Schirner, Michael; Smith, Robert E.; Spisak, Tamas; Sprenger, Julia; Swann, Nicole C.; Szinte, Martin; Takerkart, Sylvain; Thirion, Bertrand; Thomas, Adam G.; Torabian, Sajjad; Varoquaux, Gael; Voytek, Bradley; Welzel, Julius; Wilson, Martin; Yarkoni, Tal; Gorgolewski, Krzysztof J. | |
| A cellular resolution atlas of Broca's area | 1-gen-2023 | Costantini, I.; Morgan, L.; Yang, J.; Balbastre, Y.; Varadarajan, D.; Pesce, L.; Scardigli, M.; Mazzamuto, G.; Gavryusev, V.; Castelli, F. M.; Roffilli, M.; Silvestri, L.; Laffey, J.; Raia, S.; Varghese, M.; Wicinski, B.; Chang, S.; Chen, I. A.; Wang, H.; Cordero, D.; Vera, M.; Nolan, J.; Nestor, K.; Mora, J.; Iglesias, J. E.; Pallares, E. G.; Evancic, K.; Augustinack, J. C.; Fogarty, M.; Dalca, A. V.; Frosch, M. P.; Magnain, C.; Frost, R.; van der Kouwe, A.; Chen, S. -C.; Boas, D. A.; Pavone, F. S.; Fischl, B.; Hof, P. R. | |
| A Guide to Perform 3D Histology of Biological Tissues with Fluorescence Microscopy | 1-gen-2023 | Laurino, Annunziatina; Franceschini, Alessandra; Pesce, Luca; Cinci, Lorenzo; Montalbano, Alberto; Mazzamuto, Giacomo; Sancataldo, Giuseppe; Nesi, Gabriella; Costantini, Irene; Silvestri, Ludovico; Pavone, FRANCESCO SAVERIO | |
| Brain-wide neuron quantification toolkit reveals strong sexual dimorphism in the evolution of fear memory | 1-gen-2023 | Franceschini, Alessandra; Mazzamuto, Giacomo; Checcucci, Curzio; Chicchi, Lorenzo; Fanelli, Duccio; Costantini, Irene; Passani, Maria Beatrice; Silva, Bianca Ambrogina; Pavone, Francesco Saverio; Silvestri, Ludovico | |
| Fiber enhancement and 3D orientation analysis in label-free two-photon fluorescence microscopy | 1-gen-2023 | Sorelli, Michele; Costantini, Irene; Bocchi, Leonardo; Axer, Markus; Pavone, FRANCESCO SAVERIO; Mazzamuto, Giacomo | |
| High-speed light-sheet microscopy imaging and data post-processing using custom hardware and software solutions | 1-gen-2023 | Mazzamuto, G.; Silvestri, L.; Sancataldo, G.; Gavryusev, V.; Scardigli, M.; Costantini, I.; Pavone, F. S. | |
| 3D molecular phenotyping of cleared human brain tissues with light-sheet fluorescence microscopy | 1-gen-2022 | Pesce, Luca; Scardigli, Marina; Gavryusev, Vladislav; Laurino, Annunziatina; Mazzamuto, Giacomo; Brady, Niamh; Sancataldo, Giuseppe; Silvestri, Ludovico; Destrieux, Christophe; Hof, Patrick R.; Costantini, Irene; Pavone, Francesco S. | |
| Experimental imaging and Monte Carlo modeling of ultrafast pulse propagation in thin scattering slabs | 1-gen-2022 | Pattelli, Lorenzo; Mazzamuto, Giacomo | |
| Fast whole-brain imaging of seizures in zebrafish larvae by two-photon light-sheet microscopy | 1-gen-2022 | De Vito, Giuseppe; Turrini, Lapo; Müllenbroich, Caroline; Ricci, Pietro; Sancataldo, Giuseppe; Mazzamuto, Giacomo; Tiso, Natascia; Sacconi, Leonardo; Fanelli, Duccio; Silvestri, Ludovico; Vanzi, Francesco; Pavone, Francesco Saverio | |
| Microscopy-BIDS: An Extension to the Brain Imaging Data Structure for Microscopy Data | 1-gen-2022 | Bourget Marie, Hélène; Kamentsky, Lee; Ghosh Satrajit, S; Mazzamuto, Giacomo; Lazari, Alberto; Markiewicz Christopher, J; Oostenveld, Robert; Niso, Guiomar; Halchenko Yaroslav, O; Lipp, Ilona; Takerkart, Sylvain; Toussaint Paule, Joanne; Khan Ali, R; Nilsonne, Gustav; Castelli Filippo, Maria; The BIDS, Maintainers; Cohenadad, Julien | |
| Studying the trafficking of labeled trodusquemine and its application as nerve marker for light-sheet and expansion microscopy | 1-gen-2022 | Capitini, Claudia; Pesce, Luca; Fani, Giulia; Mazzamuto, Giacomo; Genovese, Massimo; Franceschini, Alessandra; Paoli, Paolo; Pieraccini, Giuseppe; Zasloff, Michael; Chiti, Fabrizio; Pavone Francesco, S; Calamai, Martino | |
| Autofluorescence enhancement for label-free imaging of myelinated fibers in mammalian brains | 1-gen-2021 | Costantini, I; Baria, E; Sorelli, M; Matuschke, F; Giardini, F; Menzel, M; Mazzamuto, G; Silvestri, L; Cicchi, R; Amunts, K; Axer, M; Pavone, Fs | |
| Comparison of Different Tissue Clearing Methods for Three-Dimensional Reconstruction of Human Brain Cellular Anatomy Using Advanced Imaging Techniques | 1-gen-2021 | Scardigli, Marina; Pesce, Luca; Brady, Niamh; Mazzamuto, Giacomo; Gavryusev, Vladislav; Silvestri, Ludovico; Hof Patrick, R; Destrieux, Christophe; Costantini, Irene; Pavone Francesco, S | |
| Large-scale, cell-resolution volumetric mapping allows layer-specific investigation of human brain cytoarchitecture | 1-gen-2021 | Costantini, Irene; Mazzamuto, Giacomo; Roffilli, Matteo; Laurino, Annunziatina; Castelli Filippo, Maria; Neri, Mattia; Lughi, Giovanni; Simonetto, Andrea; Lazzeri, Erica; Pesce, Luca; Destrieux, Christophe; Silvestri, Ludovico; Conti, Valerio; Guerrini, Renzo; Pavone, FRANCESCO SAVERIO | |
| Universal autofocus for quantitative volumetric microscopy of whole mouse brains | 1-gen-2021 | Silvestri, L; Mullenbroich, M C; Costantini, I; Di Giovanna, A P; Mazzamuto, G; Franceschini, A; Kutra, D; Kreshuk, A; Checcucci, C; Toresano, L O; Frasconi, P; Sacconi, L; Pavone, FRANCESCO SAVERIO |