FERRARI, FRANCESCO
FERRARI, FRANCESCO
Istituto di Genetica Molecolare "Luigi Luca Cavalli Sforza"
Biochemical properties of chromatin domains define genome compartmentalization
2024 Lucini, Federica; Petrini, Cristiano; Salviato, Elisa; Pal, Koustav; Rosti, Valentina; Gorini, Francesca; Santarelli, Philina; Quadri, Roberto; Lembo, Giovanni; Graziano, Giulia; Di Patrizio Soldateschi, Emanuele; Tagliaferri, Ilario; Pinatel, Eva; Sebestyén, Endre; Rotta, Luca; Gentile, Francesco; Vaira, Valentina; Lanzuolo, Chiara; Ferrari, Francesco
Leveraging Tissue-Specific Enhancer-Target Gene Regulatory Networks Identifies Enhancer Somatic Mutations That Functionally Impact Lung Cancer
2024 Hariprakash, Judith Mary; Salviato, Elisa; La Mastra, Federica; Sebestyén, Endre; Tagliaferri, Ilario; Silva, Raquel Sofia; Lucini, Federica; Farina, Lorenzo; Cinquanta, Mario; Rancati, Ilaria; Riboni, Mirko; Minardi, Simone Paolo; Roz, Luca; Gorini, Francesca; Lanzuolo, Chiara; Casola, Stefano; Ferrari, Francesco
Tissue fluidification promotes a cGAS-STING cytosolic DNA response in invasive breast cancer
2023 Frittoli, E; Palamidessi, A; Iannelli, F; Zanardi, F; Villa, S; Barzaghi, L; Abdo, H; Cancila, V; Beznoussenko, Gv; Della Chiara, G; Pagani, M; Malinverno, C; Bhattacharya, D; Pisati, F; Yu, W; Galimberti, V; Bonizzi, G; Martini, E; Mironov, Aa; Gioia, U; Ascione, F; Li, Q; Havas, K; Magni, S; Lavagnino, Z; Pennacchio, Fa; Maiuri, P; Caponi, S; Mattarelli, M; Martino, S; d'Adda di Fagagna, F; Rossi, C; Lucioni, M; Tancredi, R; Pedrazzoli, P; Vecchione, A; Petrini, C; Ferrari, F; Lanzuolo, C; Bertalot, G; Nader, G; Foiani, M; Piel, M; Cerbino, R; Giavazzi, F; Tripodo, C; Scita, G
CHD8 suppression impacts on histone H3 lysine 36 trimethylation and alters RNA alternative splicing
2022 Kerschbamer, E; Arnoldi, M; Tripathi, T; Pellegrini, M; Maturi, S; Erdin, S; Salviato, E; Di Leva, F; Sebestyén, E; Dassi, E; Zarantonello, G; Benelli, M; Campos, E; Basson, Ma; Gusella, Jf; Gustincich, S; Piazza, S; Demichelis, F; Talkowski, Me; Ferrari, F; Biagioli, M
Visualizing and Annotating Hi-C Data
2022 Pal, K; Ferrari, F
Leveraging three-dimensional chromatin architecture for effective reconstruction of enhancer-target gene regulatory interactions
2021 Salviato, E; Djordjilovic, V; Hariprakash, Jm; Tagliaferri, I; Pal, K; Ferrari, F
Oncolytic adenovirus and gene therapy with EphA2-BiTE for the treatment of pediatric high-grade gliomas
2021 Arnone, Cm; Polito, Va; Mastronuzzi, A; Carai, A; Diomedi, Fc; Antonucci, L; Petrilli, Ll; Vinci, M; Ferrari, F; Salviato, E; Scarsella, M; De Stefanis, C; Weber, G; Quintarelli, C; De Angelis, B; Brenner, Mk; Gottschalk, S; Hoyos, V; Locatelli, F; Caruana, I; Del Bufalo, F
Single-cell profiling reveals the dynamics of cytomegalovirusspecific T-cells in haploidentical hematopoietic stem cell transplantation
2021 Van Beek, Jjp; Puccio, S; Roberto, A; De Paoli, F; Graziano, G; Salviato, E; Alvisi, G; Zanon, V; Scarpa, A; Zaghi, E; Calvi, M; Di Vito, C; Mineri, R; Sarina, B; De Philippis, C; Santoro, A; Mariotti, J; Bramanti, S; Ferrari, F; Castagna, L; Mavilio, D; Lugli, E
T-Cells Expressing Receptor Recombination/Revision Machinery Are Detected in the Tumor Microenvironment and Expanded in Genomically Over-unstable Models
2021 Morello, Gaia; Cancila, Valeria; LA ROSA, Massimo; Germano, Giovanni; Lecis, Daniele; Amodio, Vito; Zanardi, Federica; Iannelli, Fabio; Greco, Daniele; LA PAGLIA, Laura; Fiannaca, Antonino; Urso, Alfonso; Graziano, Giulia; Ferrari, Francesco; M Pupa, Serenella; Sangaletti, Sabina; Chiodoni, Claudia; Pruneri, Giancarlo; Bardelli, Alberto; P Colombo, Mario; Tripodo, Claudio
Dysfunctional polycomb transcriptional repression contributes to Lamin A/C dependent muscular dystrophy
2020 Bianchi, A; Mozzetta, C; Pegoli, G; Lucini, F; Valsoni, S; Rosti, V; Petrini, C; Cortesi, A; Gregoretti, F; Antonelli, L; Oliva, G; De Bardi, M; Rizzi, R; Bodega, B; Pasini, D; Ferrari, F; Bearzi, C; Lanzuolo, C
HiCBricks: building blocks for efficient handling of large Hi-C datasets.
2020 Pal, K; Tagliaferri, I; Livi, Cm; Ferrari, F
SAMMY-seq reveals early alteration of heterochromatin and deregulation of bivalent genes in Hutchinson-Gilford Progeria Syndrome
2020 Sebestyen, E; Marullo, F; Lucini, F; Petrini, C; Bianchi, A; Valsoni, S; Olivieri, I; Antonelli, L; Gregoretti, F; Oliva, G; Ferrari, F; Lanzuolo, C
Computational Biology Solutions to Identify Enhancers-target Gene Pairs
2019 Hariprakash, Jm; Ferrari, F
CXCR3 Identifies Human Naive CD8(+) T Cells with Enhanced Effector Differentiation Potential
2019 De Simone, Gabriele; Mazza Emilia, M C; Cassotta, Antonino; Davydov Alexey, N; Kuka, Mirela; Zanon, Veronica; De Paoli, Federica; Scamardella, Eloise; Metsger, Maria; Roberto, Alessandra; Pilipow, Karolina; Colombo Federico, S; Tenedini, Elena; Tagliafico, Enrico; Gattinoni, Luca; Mavilio, Domenico; Peano, Clelia; Price David, A; Singh Satya, P; Farber Joshua, M; Serra, Valentina; Cucca, Francesco; Ferrari, Francesco; Orru, Valeria; Fiorillo, Edoardo; Iannacone, Matteo; Chudakov Dmitriy, M; Sallusto, Federica; Lugli, Enrico
Global chromatin conformation differences in the Drosophila dosage compensated chromosome X
2019 Pal, K; Forcato, M; Jost, D; Sexton, T; Vaillant, C; Salviato, E; Mazza, Emc; Lugli, E; Cavalli, G; Ferrari, F
Hi-C analysis: from data generation to integration
2019 Pal K.; Forcato M.; Ferrari F.
Early chromatin conformational changes in Hutchinson-Gilford progeria syndrome revealed by heterochromatin analysis
2018 Sebestyén, Endre; Marullo, Fabrizia; Lucini, Federica; Valsoni, Sara; Antonelli, Laura; Gregoretti, Francesco; Oliva, Gennaro; Ferrari, Francesco; Lanzuolo, Chiara
Early chromatin conformational changes in Hutchinson-Gilford progeria syndrome revealed by heterochromatin analysis
2018 Endre Sebestyén; Fabrizia Marullo; Federica Lucini;Sara Valsoni; Laura Antonelli; Francesco Gregoretti; Gennaro Oliva; Francesco Ferrari;Chiara Lanzuolo
Comparison of computational methods for Hi-C data analysis
2017 Forcato, M; Nicoletti, C; Pal, K; Livi, Cm; Ferrari, F; Bicciato, S
WoPPER: Web server for Position Related data analysis of gene Expression in Prokaryotes.
2017 Puccio, Simone; Grillo, Giorgio; Licciulli, VITO FLAVIO; Severgnini, Marco; Liuni, Sabino; Bicciato, Silvio; DE BELLIS, Gianluca; Ferrari, Francesco; Peano, Clelia
| Titolo | Data di pubblicazione | Autore(i) | File |
|---|---|---|---|
| Biochemical properties of chromatin domains define genome compartmentalization | 1-gen-2024 | Lucini, Federica; Petrini, Cristiano; Salviato, Elisa; Pal, Koustav; Rosti, Valentina; Gorini, Francesca; Santarelli, Philina; Quadri, Roberto; Lembo, Giovanni; Graziano, Giulia; Di Patrizio Soldateschi, Emanuele; Tagliaferri, Ilario; Pinatel, Eva; Sebestyén, Endre; Rotta, Luca; Gentile, Francesco; Vaira, Valentina; Lanzuolo, Chiara; Ferrari, Francesco | |
| Leveraging Tissue-Specific Enhancer-Target Gene Regulatory Networks Identifies Enhancer Somatic Mutations That Functionally Impact Lung Cancer | 1-gen-2024 | Hariprakash, Judith Mary; Salviato, Elisa; La Mastra, Federica; Sebestyén, Endre; Tagliaferri, Ilario; Silva, Raquel Sofia; Lucini, Federica; Farina, Lorenzo; Cinquanta, Mario; Rancati, Ilaria; Riboni, Mirko; Minardi, Simone Paolo; Roz, Luca; Gorini, Francesca; Lanzuolo, Chiara; Casola, Stefano; Ferrari, Francesco | |
| Tissue fluidification promotes a cGAS-STING cytosolic DNA response in invasive breast cancer | 1-gen-2023 | Frittoli, E; Palamidessi, A; Iannelli, F; Zanardi, F; Villa, S; Barzaghi, L; Abdo, H; Cancila, V; Beznoussenko, Gv; Della Chiara, G; Pagani, M; Malinverno, C; Bhattacharya, D; Pisati, F; Yu, W; Galimberti, V; Bonizzi, G; Martini, E; Mironov, Aa; Gioia, U; Ascione, F; Li, Q; Havas, K; Magni, S; Lavagnino, Z; Pennacchio, Fa; Maiuri, P; Caponi, S; Mattarelli, M; Martino, S; d'Adda di Fagagna, F; Rossi, C; Lucioni, M; Tancredi, R; Pedrazzoli, P; Vecchione, A; Petrini, C; Ferrari, F; Lanzuolo, C; Bertalot, G; Nader, G; Foiani, M; Piel, M; Cerbino, R; Giavazzi, F; Tripodo, C; Scita, G | |
| CHD8 suppression impacts on histone H3 lysine 36 trimethylation and alters RNA alternative splicing | 1-gen-2022 | Kerschbamer, E; Arnoldi, M; Tripathi, T; Pellegrini, M; Maturi, S; Erdin, S; Salviato, E; Di Leva, F; Sebestyén, E; Dassi, E; Zarantonello, G; Benelli, M; Campos, E; Basson, Ma; Gusella, Jf; Gustincich, S; Piazza, S; Demichelis, F; Talkowski, Me; Ferrari, F; Biagioli, M | |
| Visualizing and Annotating Hi-C Data | 1-gen-2022 | Pal, K; Ferrari, F | |
| Leveraging three-dimensional chromatin architecture for effective reconstruction of enhancer-target gene regulatory interactions | 1-gen-2021 | Salviato, E; Djordjilovic, V; Hariprakash, Jm; Tagliaferri, I; Pal, K; Ferrari, F | |
| Oncolytic adenovirus and gene therapy with EphA2-BiTE for the treatment of pediatric high-grade gliomas | 1-gen-2021 | Arnone, Cm; Polito, Va; Mastronuzzi, A; Carai, A; Diomedi, Fc; Antonucci, L; Petrilli, Ll; Vinci, M; Ferrari, F; Salviato, E; Scarsella, M; De Stefanis, C; Weber, G; Quintarelli, C; De Angelis, B; Brenner, Mk; Gottschalk, S; Hoyos, V; Locatelli, F; Caruana, I; Del Bufalo, F | |
| Single-cell profiling reveals the dynamics of cytomegalovirusspecific T-cells in haploidentical hematopoietic stem cell transplantation | 1-gen-2021 | Van Beek, Jjp; Puccio, S; Roberto, A; De Paoli, F; Graziano, G; Salviato, E; Alvisi, G; Zanon, V; Scarpa, A; Zaghi, E; Calvi, M; Di Vito, C; Mineri, R; Sarina, B; De Philippis, C; Santoro, A; Mariotti, J; Bramanti, S; Ferrari, F; Castagna, L; Mavilio, D; Lugli, E | |
| T-Cells Expressing Receptor Recombination/Revision Machinery Are Detected in the Tumor Microenvironment and Expanded in Genomically Over-unstable Models | 1-gen-2021 | Morello, Gaia; Cancila, Valeria; LA ROSA, Massimo; Germano, Giovanni; Lecis, Daniele; Amodio, Vito; Zanardi, Federica; Iannelli, Fabio; Greco, Daniele; LA PAGLIA, Laura; Fiannaca, Antonino; Urso, Alfonso; Graziano, Giulia; Ferrari, Francesco; M Pupa, Serenella; Sangaletti, Sabina; Chiodoni, Claudia; Pruneri, Giancarlo; Bardelli, Alberto; P Colombo, Mario; Tripodo, Claudio | |
| Dysfunctional polycomb transcriptional repression contributes to Lamin A/C dependent muscular dystrophy | 1-gen-2020 | Bianchi, A; Mozzetta, C; Pegoli, G; Lucini, F; Valsoni, S; Rosti, V; Petrini, C; Cortesi, A; Gregoretti, F; Antonelli, L; Oliva, G; De Bardi, M; Rizzi, R; Bodega, B; Pasini, D; Ferrari, F; Bearzi, C; Lanzuolo, C | |
| HiCBricks: building blocks for efficient handling of large Hi-C datasets. | 1-gen-2020 | Pal, K; Tagliaferri, I; Livi, Cm; Ferrari, F | |
| SAMMY-seq reveals early alteration of heterochromatin and deregulation of bivalent genes in Hutchinson-Gilford Progeria Syndrome | 1-gen-2020 | Sebestyen, E; Marullo, F; Lucini, F; Petrini, C; Bianchi, A; Valsoni, S; Olivieri, I; Antonelli, L; Gregoretti, F; Oliva, G; Ferrari, F; Lanzuolo, C | |
| Computational Biology Solutions to Identify Enhancers-target Gene Pairs | 1-gen-2019 | Hariprakash, Jm; Ferrari, F | |
| CXCR3 Identifies Human Naive CD8(+) T Cells with Enhanced Effector Differentiation Potential | 1-gen-2019 | De Simone, Gabriele; Mazza Emilia, M C; Cassotta, Antonino; Davydov Alexey, N; Kuka, Mirela; Zanon, Veronica; De Paoli, Federica; Scamardella, Eloise; Metsger, Maria; Roberto, Alessandra; Pilipow, Karolina; Colombo Federico, S; Tenedini, Elena; Tagliafico, Enrico; Gattinoni, Luca; Mavilio, Domenico; Peano, Clelia; Price David, A; Singh Satya, P; Farber Joshua, M; Serra, Valentina; Cucca, Francesco; Ferrari, Francesco; Orru, Valeria; Fiorillo, Edoardo; Iannacone, Matteo; Chudakov Dmitriy, M; Sallusto, Federica; Lugli, Enrico | |
| Global chromatin conformation differences in the Drosophila dosage compensated chromosome X | 1-gen-2019 | Pal, K; Forcato, M; Jost, D; Sexton, T; Vaillant, C; Salviato, E; Mazza, Emc; Lugli, E; Cavalli, G; Ferrari, F | |
| Hi-C analysis: from data generation to integration | 1-gen-2019 | Pal K.; Forcato M.; Ferrari F. | |
| Early chromatin conformational changes in Hutchinson-Gilford progeria syndrome revealed by heterochromatin analysis | 1-gen-2018 | Sebestyén, Endre; Marullo, Fabrizia; Lucini, Federica; Valsoni, Sara; Antonelli, Laura; Gregoretti, Francesco; Oliva, Gennaro; Ferrari, Francesco; Lanzuolo, Chiara | |
| Early chromatin conformational changes in Hutchinson-Gilford progeria syndrome revealed by heterochromatin analysis | 1-gen-2018 | Endre Sebestyén; Fabrizia Marullo; Federica Lucini;Sara Valsoni; Laura Antonelli; Francesco Gregoretti; Gennaro Oliva; Francesco Ferrari;Chiara Lanzuolo | |
| Comparison of computational methods for Hi-C data analysis | 1-gen-2017 | Forcato, M; Nicoletti, C; Pal, K; Livi, Cm; Ferrari, F; Bicciato, S | |
| WoPPER: Web server for Position Related data analysis of gene Expression in Prokaryotes. | 1-gen-2017 | Puccio, Simone; Grillo, Giorgio; Licciulli, VITO FLAVIO; Severgnini, Marco; Liuni, Sabino; Bicciato, Silvio; DE BELLIS, Gianluca; Ferrari, Francesco; Peano, Clelia |