COLONNA, VINCENZA

COLONNA, VINCENZA  

Istituto di genetica e biofisica "Adriano Buzzati Traverso"- IGB - Sede Napoli  

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A comprehensive analysis of SARS-CoV-2 missense mutations indicates that all possible amino acid replacements in the viral proteins occurred within the first two-and-a-half years of the pandemic 1-gen-2024 Balasco, Nicole; Damaggio, Gianluca; Esposito, Luciana; Colonna, Vincenza; Vitagliano, Luigi
Three-dimensional environment sensitizes pancreatic cancer cells to the anti-proliferative effect of budesonide by reprogramming energy metabolism 1-gen-2024 Ibello, Eduardo; Saracino, Federica; Delle Cave, Donatella; Buonaiuto, Silvia; Amoroso, Filomena; Andolfi, Gennaro; Corona, Marco; Guardiola, Ombretta; Colonna, Vincenza; Sainz Jr, Bruno; Altucci, Lucia; De Cesare, Dario; Cobellis, Gilda; Lonardo, Enza; Patriarca, Eduardo Jorge; D'Aniello, Cristina; Minchiotti, Gabriella
A draft human pangenome reference 1-gen-2023 Liao, Ww; Asri, M; Ebler, J; Doerr, D; Haukness, M; Hickey, G; Lu, S; Lucas, Jk; Monlong, J; Abel, Hj; Buonaiuto, S; Chang, Xh; Cheng, H; Chu, J; Colonna, V; Eizenga, Jm; Feng, X; Fischer, C; Fulton, Rs; Garg, S; Groza, C; Guarracino, A; Harvey, Wt; Heumos, S; Howe, K; Jain, M; Lu, Ty; Markello, C; Martin, Fj; Mitchell, Mw; Munson, Km; Mwaniki, Mn; Novak, Am; Olsen, He; Pesout, T; Porubsky, D; Prins, P; Sibbesen, Ja; Siren, J; Tomlinson, C; Villani, F; Vollger, Mr; Antonaccifulton, Ll; Baid, G; Baker, Ca; Belyaeva, A; Billis, K; Carroll, A; Chang, Pc; Cody, S; Cook, De; Cookdeegan, Rm; Cornejo, Oe; Diekhans, M; Ebert, P; Fairley, S; Fedrigo, O; Felsenfeld, Al; Formenti, G; Frankish, A; Gao, Y; Garrison, Na; Giron, Cg; Green, Re; Haggerty, L; Hoekzema, K; Hourlier, T; Ji, Hp; Kenny, Ee; Koenig, Ba; Kolesnikov, A; Korbel, Jo; Kordosky, J; Koren, S; Lee, Hj; Lewis, Ap; Magalhaes, H; Marcosola, S; Marijon, P; Mccartney, A; Mcdaniel, J; Mountcastle, J; Nattestad, M; Nurk, S; Olson, Nd; Popejoy, Ab; Puiu, D; Rautiainen, M; Regier, Aa; Rhie, A; Sacco, S; Sanders, Ad; Schneider, Va; Schultz, Bi; Shafin, K; Smith, Mw; Sofia, Hj; Abou Tayoun, An; Thibaudnissen, F; Tricomi, Ff; Wagner, J; Walenz, B; Wood, Jmd; Zimin, Av; Bourque, G; Chaisson, Mjp; Flicek, P; Phillippy, Am; Zook, Jm; Eichler, Ee; Haussler, D; Wang, T; Jarvis, Ed; Miga, Kh; Garrison, E; Marschall, T; Hall, Im; Li, H; Paten, B
A novel quantitative trait locus implicates Msh3 in the propensity for genome-wide short tandem repeat expansions in mice 1-gen-2023 O Maksimov, Mikhail; Wu, Cynthia; G Ashbrook, David; Villani, Flavia; Colonna, Vincenza; Mousavi, Nima; Ma, Nichole; Lu, Lu; K Pritchard, Jonathan; Goren, Alon; W Williams, Robert; A Palmer, Abraham; Gymrek, Melissa
Increased mutation and gene conversion within human segmental duplications 1-gen-2023 Vollger, Mr; Dishuck, Pc; Harvey, Wt; Dewitt, Ws; Guitart, X; Goldberg, Me; Rozanski, An; Lucas, J; Asri, M; Abel, Hj; Antonaccifulton, Ll; Baid, G; Baker, Ca; Belyaeva, A; Billis, K; Bourque, G; Buonaiuto, S; Carroll, A; Chaisson, Mjp; Chang, Pc; Chang, Xh; Cheng, H; Chu, J; Cody, S; Colonna, V; Cook, De; Cookdeegan, Rm; Cornejo, Oe; Diekhans, M; Doerr, D; Ebert, P; Ebler, J; Eizenga, Jm; Fairley, S; Fedrigo, O; Felsenfeld, Al; Feng, X; Fischer, C; Flicek, P; Formenti, G; Frankish, A; Fulton, Rs; Gao, Y; Garg, S; Garrison, E; Garrison, Na; Giron, Cg; Green, Re; Groza, C; Guarracino, A; Haggerty, L; Hall, Im; Haukness, M; Haussler, D; Heumos, S; Hickey, G; Hourlier, T; Howe, K; Jain, M; Jarvis, Ed; Ji, Hp; Kenny, Ee; Koenig, Ba; Kolesnikov, A; Korbel, Jo; Kordosky, J; Koren, S; Lee, Hj; Li, H; Liao, Ww; Lu, S; Lu, Ty; Lucas, Jk; Magalhaes, H; Marcosola, S; Marijon, P; Markello, C; Marschall, T; Martin, Fj; Mccartney, A; Mcdaniel, J; Miga, Kh; Mitchell, Mw; Monlong, J; Mountcastle, J; Mwaniki, Mn; Nattestad, M; Novak, Am; Nurk, S; Olsen, He; Olson, Nd; Paten, B; Pesout, T; Phillippy, Am; Popejoy, Ab; Prins, P; Puiu, D; Rautiainen, M; Regier, Aa; Rhie, A; Sacco, S; Sanders, Ad; Schneider, Va; Schultz, Bi; Shafin, K; Sibbesen, Ja; Siren, J; Smith, Mw; Sofia, Hj; Abou Tayoun, An; Thibaudnissen, F; Tomlinson, C; Tricomi, Ff; Villani, F; Vollger, Mr; Wagner, J; Walenz, B; Wang, T; Wood, Jmd; Zimin, Av; Zook, Jm; Munson, Km; Lewis, Ap; Hoekzema, K; Logsdon, Ga; Porubsky, D; Paten, B; Harris, K; Hsieh, Ph; Eichler, Ee
Pangenome graph construction from genome alignments with Minigraph-Cactus 1-gen-2023 Hickey, G; Monlong, J; Ebler, J; Novak, Am; Eizenga, Jm; Gao, Y; Abel, Hj; Antonaccifulton, Ll; Asri, M; Baid, G; Baker, Ca; Belyaeva, A; Billis, K; Bourque, G; Buonaiuto, S; Carroll, A; Chaisson, Mjp; Chang, Pc; Chang, Xh; Cheng, H; Chu, J; Cody, S; Colonna, V; Cook, De; Cookdeegan, Rm; Cornejo, Oe; Diekhans, M; Doerr, D; Ebert, P; Ebler, J; Eichler, Ee; Fairley, S; Fedrigo, O; Felsenfeld, Al; Feng, X; Fischer, C; Flicek, P; Formenti, G; Frankish, A; Fulton, Rs; Garg, S; Garrison, E; Garrison, Na; Giron, Cg; Green, Re; Groza, C; Guarracino, A; Haggerty, L; Hall, Im; Harvey, Wt; Haukness, M; Haussler, D; Heumos, S; Hoekzema, K; Hourlier, T; Howe, K; Jain, M; Jarvis, Ed; Ji, Hp; Kenny, Ee; Koenig, Ba; Kolesnikov, A; Korbel, Jo; Kordosky, J; Koren, S; Lee, Hj; Lewis, Ap; Liao, Ww; Lu, S; Lu, Ty; Lucas, Jk; Magalhaes, H; Marcosola, S; Marijon, P; Markello, C; Marschall, T; Martin, Fj; Mccartney, A; Mcdaniel, J; Miga, Kh; Mitchell, Mw; Mountcastle, J; Munson, Km; Mwaniki, Mn; Nattestad, M; Nurk, S; Olsen, He; Olson, Nd; Pesout, T; Phillippy, Am; Popejoy, Ab; Porubsky, D; Prins, P; Puiu, D; Rautiainen, M; Regier, Aa; Rhie, A; Sacco, S; Sanders, Ad; Schneider, Va; Schultz, Bi; Shafin, K; Sibbesen, Ja; Siren, J; Smith, Mw; Sofia, Hj; Tayoun, Ana; Thibaudnissen, F; Tomlinson, C; Tricomi, Ff; Villani, F; Vollger, Mr; Wagner, J; Walenz, B; Wang, T; Wood, Jmd; Zimin, Av; Zook, Jm; Marschall, T; Li, H; Paten, B
Recombination between heterologous human acrocentric chromosomes 1-gen-2023 Guarracino A.; Buonaiuto S.; de Lima L.G.; Potapova T.; Rhie A.; Koren S.; Rubinstein B.; Fischer C.; Abel H.J.; AntonacciFulton L.L.; Asri M.; Baid G.; Baker C.A.; Belyaeva A.; Billis K.; Bourque G.; Carroll A.; Chaisson M.J.P.; Chang P.C.; Chang X.H.; Cheng H.; Chu J.; Cody S.; Cook D.E.; CookDeegan R.M.; Cornejo O.E.; Diekhans M.; Doerr D.; Ebert P.; Ebler J.; Eichler E.E.; Eizenga J.M.; Fairley S.; Fedrigo O.; Felsenfeld A.L.; Feng X.; Flicek P.; Formenti G.; Frankish A.; Fulton R.S.; Gao Y.; Garg S.; Garrison N.A.; Giron C.G.; Green R.E.; Groza C.; Haggerty L.; Hall I.; Harvey W.T.; Haukness M.; Haussler D.; Heumos S.; Hickey G.; Hoekzema K.; Hourlier T.; Howe K.; Jain M.; Jarvis E.D.; Ji H.P.; Kenny E.E.; Koenig B.A.; Kolesnikov A.; Korbel J.O.; Kordosky J.; Lee H.J.; Lewis A.P.; Li H.; Liao W.W.; Lu S.; Lu T.Y.; Lucas J.K.; Magalhaes H.; MarcoSola S.; Marijon P.; Markello C.; Marschall T.; Martin F.J.; McCartney A.; McDaniel J.; Miga K.H.; Mitchell M.W.; Monlong J.; Mountcastle J.; Munson K.M.; Mwaniki M.N.; Nattestad M.; Novak A.M.; Nurk S.; Olsen H.E.; Olson N.D.; Paten B.; Pesout T.; Popejoy A.B.; Porubsky D.; Prins P.; Puiu D.; Rautiainen M.; Regier A.A.; Sacco S.; Sanders A.D.; Schneider V.A.; Schultz B.I.; Shafin K.; Sibbesen J.A.; Siren J.; Smith M.W.; Sofia H.J.; Tayoun A.N.A.; ThibaudNissen F.; Tomlinson C.; Tricomi F.F.; Villani F.; Vollger M.R.; Wagner J.; Walenz B.; Wang T.; Wood J.M.D.; Zimin A.V.; Zook J.M.; Gerton J.L.; Phillippy A.M.; Colonna V.; Garrison E.
LAMC2 marks a tumor-initiating cell population with an aggressive signature in pancreatic cancer 1-gen-2022 Delle Cave, Donatella; Buonaiuto, Silvia; Sainz Jr, Bruno; Fantuz, Marco; Mangini, Maria; Carrer, Alessandro; Di Domenico, Annalisa; Teresa Iavazzo, Tea; Andolfi, Gennaro; Cortina, Carme; Sevillano, Marta; Heeschen, Christopher; Colonna, Vincenza; Corona, Marco; Cucciardi, Antonio; Di Guida, Martina; Batlle, Eduard; De Luca, Annachiara; Lonardo, Enza
Maternal exome analysis for the diagnosis of oocyte maturation defects and early embryonic developmental arrest 1-gen-2022 Antonio Capalbo ;Silvia Buonaiuto ;Matteo Figliuzzi ;Gianluca Damaggio ;Laura Girardi ;Silvia Caroselli ;Maurizio Poli ;Cristina Patassini ;Murat Cetinkaya ;Beril Yuksel ;Ajuna Azad ;Marie Louise Grøndahl ;Eva R Hoffmann ;Carlos Simón ;Vincenza Colonna ;Semra Kahraman
Prioritization of putatively detrimental variants in euploid miscarriages 1-gen-2022 Silvia Buonaiuto ;Immacolata Di Biase ;Valentina Aleotti ;Amin Ravaei ;Adriano De Marino ;Gianluca Damaggio ;Marco Chierici ;Madhuri Pulijala ;Palmira D'Ambrosio ;Gabriella Esposito ;Qasim Ayub ;Cesare Furlanello ;Pantaleo Greco ;Antonio Capalbo ;Michele Rubini ;Sebastiano Di Biase ;Vincenza Colonna
A global analysis of conservative and non-conservative mutations in SARS-CoV-2 detected in the first year of the COVID-19 world-wide diffusion 1-gen-2021 Balasco, Nicole; Damaggio, Gianluca; Esposito, Luciana; Villani, Flavia; Berisio, Rita; Colonna, Vincenza; Vitagliano, Luigi
Efficient dynamic variation graphs 1-gen-2021 M Eizenga, Jordan; M Novak, Adam; Kobayashi, Emily; Villani, Flavia; Cisar, Cecilia; Heumos, Simon; Hickey, Glenn; Colonna, Vincenza; Paten, Benedict; Garrison, Erik
Genetic instability and anti-HPV immune response as drivers of infertility associated with HPV infection 1-gen-2021 Isaguliants M.; Krasnyak S.; Smirnova O.; Colonna V.; Apolikhin O.; Buonaguro F.M.
Efficient dynamic variation graphs 1-gen-2020 Eizenga, Jm; Novak, Am; Kobayashi, E; Villani, F; Cisar, C; Heumos, S; Hickey, G; Colonna, V; Paten, B; Garrison, E
Maternal exome analysis for the diagnosis of oocyte maturation defects and early embryonic developmental arrest 1-gen-2020 Capalbo, A; Buonaiuto, S; Figliuzzi, M; Damaggio, G; Girardi, L; Caroselli, S; Polim, ; Patassini, C; Cetinkaya, M; Yuksel, B; Azad, A; Grøndahl, Ml; Hoffmann, Er; Simónc, ; Colonna, V; Kahraman, S
The ELIXIR-IT Training Programme: an overview of activities, collaborations and strategies 1-gen-2020 Loredana Le Pera ; Vincenza Colonna ; Francesca De Leo ;Luana Licata ;Anna Marabotti ;Ivan Miçetic ; Federico Zambelli ; Graziano Pesole ; Allegra Via
The ELIXIR-IT Training Programme: an overview of activities, collaborations and strategies 1-gen-2020 Le Pera, Loredana; Colonna, Vincenza; DE LEO, Francesca; Licata, Luana; Marabotti, Anna; Miçetiç, Ivan; Zambelli, Federico; Pesole, Graziano; Via, Allegra
Genomic diversity and novel genome-wide association with fruit morphology in Capsicum, from 746k polymorphic sites 1-gen-2019 Colonna, Vincenza; D'Agostino, Nunzio; Garrison, Erik; Albrechtsen, Anders; Meisner, Jonas; Facchiano, Angelo; Cardi, Teodoro; Tripodi, Pasquale
Identification of sex determination genes and their evolution in Phlebotominae sand flies (Diptera, Nematocera) 1-gen-2019 Petrella, V; Aceto, S; Colonna, V; Saccone, G; Sanges, R; Polanska, N; Volf, P; Gradoni, L; Bongiorno, G; Salvemini, M
Inter-individual genomic heterogeneity within European population isolates 1-gen-2019 Anagnostou, P; Dominici, V; Battaggia, C; Lisi, A; Sarno, S; Boattini, A; Calo, C; Francalacci, P; Vona, G; Tofanelli, S; Vilar, Mg; Colonna, V; Pagani, L; Bisol, Gd