An automated pipeline for Correlagenes, a new tool to interpretate the human transcriptome

In this report, the automated pipeline for CorrelaGenes, a new bioinformatics tool that performs the analysis of gene co- expression, is presented. The distributed platform, accessible from Internet, provides both a straightforward user-friendly web interface to set up the appropriate parameters for the subsequent analysis and the back-end procedures that, tabulating and processing the input data, send the results back to the user. Two Linux servers and an area shared by NFS between them form the hardware background on which the procedures based on scripts in Html, PHP, and Linux shell are implemented.