In this report performances of ChromStruct4 and tadbit have been compared. These are two methods for the inference of chromatin three-dimensional conformations starting from Chromosome Conforma- tion Capture data. tadbit and ChromStruct4 have been tested against the same data sets from real hi-c experiments. With comparative experi- ments, also robustness of ChromStruct4 against biases have been tested.

Comparison between ChromStruct4 and TADbit

Caudai C;Salerno E;Zoppé M;Tonazzini A
2017

Abstract

In this report performances of ChromStruct4 and tadbit have been compared. These are two methods for the inference of chromatin three-dimensional conformations starting from Chromosome Conforma- tion Capture data. tadbit and ChromStruct4 have been tested against the same data sets from real hi-c experiments. With comparative experi- ments, also robustness of ChromStruct4 against biases have been tested.
2017
Istituto di Fisiologia Clinica - IFC
Istituto di Scienza e Tecnologie dell'Informazione "Alessandro Faedo" - ISTI
Cromosome conformation capture
Topologically associating domains
Contact matrices
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/20.500.14243/326266
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