We extend some recent results on the necessary and sufficient conditions that a symmetric integer matrix of order n ≥ 3 must satisfy to encode the Path-Length Matrix (PLM) of a Unrooted Binary Tree (UBT) with n leaves. This problem is at the core of the combinatorics of the Balanced Minimum Evolution Problem, a NP-hard problem much studied in the literature on molecular phylogenetics. We show that, for any natural 3 ≤ n ≤ 11, a reduced set of known conditions, excluding Buneman’ strong four-point conditions, is both necessary and sufficient to characterize PLMs of UBTs. In addition, we present a second and more general characterization based solely on linear conditions derived from the topological properties of UBTs.

Characterizing path-length matrices of unrooted binary trees

Roberto Ronco
2024

Abstract

We extend some recent results on the necessary and sufficient conditions that a symmetric integer matrix of order n ≥ 3 must satisfy to encode the Path-Length Matrix (PLM) of a Unrooted Binary Tree (UBT) with n leaves. This problem is at the core of the combinatorics of the Balanced Minimum Evolution Problem, a NP-hard problem much studied in the literature on molecular phylogenetics. We show that, for any natural 3 ≤ n ≤ 11, a reduced set of known conditions, excluding Buneman’ strong four-point conditions, is both necessary and sufficient to characterize PLMs of UBTs. In addition, we present a second and more general characterization based solely on linear conditions derived from the topological properties of UBTs.
2024
Istituto di iNgegneria del Mare - INM (ex INSEAN)
combinatorial optimization, tree realization, balanced minimum evolution, unrooted binary trees, path-length matrices, Kraft conditions, Buneman’s four-point conditions.
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/20.500.14243/525113
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