We discuss multiscale simulations of long biopolymer translocation through wide nanopores that can ac- commodate multiple polymer strands. The simulations provide clear evidence of folding quantization, namely the translocation proceeds through multifolded configurations characterized by a well-defined integer number of folds. As a consequence, the translocation time acquires a dependence on the average folding number, which results in a deviation from the single-exponent power law characterizing single-file translocation through narrow pores. The mechanism of folding quantization allows polymers above a threshold length (approximately 1000 persistence lengths for double-stranded DNA) to exhibit cooperative behavior, and as a result to translocate noticeably faster.
Quantized biopolymer translocation through nanopores: departure from simple scaling
Melchionna S;Bernaschi M;Succi S
2009
Abstract
We discuss multiscale simulations of long biopolymer translocation through wide nanopores that can ac- commodate multiple polymer strands. The simulations provide clear evidence of folding quantization, namely the translocation proceeds through multifolded configurations characterized by a well-defined integer number of folds. As a consequence, the translocation time acquires a dependence on the average folding number, which results in a deviation from the single-exponent power law characterizing single-file translocation through narrow pores. The mechanism of folding quantization allows polymers above a threshold length (approximately 1000 persistence lengths for double-stranded DNA) to exhibit cooperative behavior, and as a result to translocate noticeably faster.File | Dimensione | Formato | |
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