The propensity to form fibril in disease-related proteins is a widely studied phenomenon, but its correlation, if any, with structural characteristics of the assocd. proteins is not clearly understood. However, the observation has been made that some proteins that readily form amyloid have a significant no. of backbone H bonds that are exposed to solvent mols., suggesting that these regions have a propensity toward protein interaction and aggregation. High-resoln. x-ray structures of the sheep and human C-terminal prion protein have provided a useful description of surface and partially buried waters. By mol. dynamics simulations, we investigated the structural role of these water mols. The solvent dynamic behavior on the protein surface reveals significant features about the stability and the potential interactions of the prion protein. The protein presents regions of tightly bound conserved waters that are necessary to hold in place local elements of the fold, as well as regions where the local water is in fast exchange with bulk water. These results are evidenced by a map of the spatial distribution entropy of the solvent around the protein. The particular behavior of the solvent around these regions may be crucial in the folding stability and in terms of aggregation loci.
Prion and water: Tight and dynamical hydration sites have a key role in structural stability.
2005
Abstract
The propensity to form fibril in disease-related proteins is a widely studied phenomenon, but its correlation, if any, with structural characteristics of the assocd. proteins is not clearly understood. However, the observation has been made that some proteins that readily form amyloid have a significant no. of backbone H bonds that are exposed to solvent mols., suggesting that these regions have a propensity toward protein interaction and aggregation. High-resoln. x-ray structures of the sheep and human C-terminal prion protein have provided a useful description of surface and partially buried waters. By mol. dynamics simulations, we investigated the structural role of these water mols. The solvent dynamic behavior on the protein surface reveals significant features about the stability and the potential interactions of the prion protein. The protein presents regions of tightly bound conserved waters that are necessary to hold in place local elements of the fold, as well as regions where the local water is in fast exchange with bulk water. These results are evidenced by a map of the spatial distribution entropy of the solvent around the protein. The particular behavior of the solvent around these regions may be crucial in the folding stability and in terms of aggregation loci.I documenti in IRIS sono protetti da copyright e tutti i diritti sono riservati, salvo diversa indicazione.
