Genetic association studies of age-related, chronic human diseases often suffer from a lack of power to detect modest effects. Here we propose an alternative approach of including healthy centenarians as a more homogeneous and extreme control group. As a proof of principle we focused on type 2 diabetes (T2D) and assessed /genotypic associations of 31 SNPs associated with T2D, diabetes complications and metabolic diseases and SNPs of genes relevant for telomere stability and age-related diseases. We hypothesized that the frequencies of risk variants are inversely correlated with decreasing health and longevity. We performed association analyses comparing diabetic patients and non-diabetic controls followed by association analyses with extreme phenotypic groups (T2D patients with complications and centenarians). Results drew attention to rs7903146 (TCF7L2 gene) that showed a constant increase in the frequencies of risk genotype (TT) from centenarians to diabetic patients who developed macro-complications and the strongest genotypic association was detected when diabetic patients were compared to centenarians (p_value = 9.066*10(-)(7)). We conclude that robust and biologically relevant associations can be obtained when extreme phenotypes, even with a small sample size, are compared.

Centenarians as super-controls to assess the biological relevance of genetic risk factors for common age-related diseases: a proof of principle on type 2 diabetes

Tieri P;
2013

Abstract

Genetic association studies of age-related, chronic human diseases often suffer from a lack of power to detect modest effects. Here we propose an alternative approach of including healthy centenarians as a more homogeneous and extreme control group. As a proof of principle we focused on type 2 diabetes (T2D) and assessed /genotypic associations of 31 SNPs associated with T2D, diabetes complications and metabolic diseases and SNPs of genes relevant for telomere stability and age-related diseases. We hypothesized that the frequencies of risk variants are inversely correlated with decreasing health and longevity. We performed association analyses comparing diabetic patients and non-diabetic controls followed by association analyses with extreme phenotypic groups (T2D patients with complications and centenarians). Results drew attention to rs7903146 (TCF7L2 gene) that showed a constant increase in the frequencies of risk genotype (TT) from centenarians to diabetic patients who developed macro-complications and the strongest genotypic association was detected when diabetic patients were compared to centenarians (p_value = 9.066*10(-)(7)). We conclude that robust and biologically relevant associations can be obtained when extreme phenotypes, even with a small sample size, are compared.
2013
Istituto Applicazioni del Calcolo ''Mauro Picone''
Inglese
5
5
373
85
Sì, ma tipo non specificato
1945-4589 Garagnani, Paolo Giuliani, Cristina Pirazzini, Chiara Olivieri, Fabiola Bacalini, Maria Giulia Ostan, Rita Mari, Daniela Passarino, Giuseppe Monti, Daniela Bonfigli, Anna Rita Boemi, Massimo Ceriello, Antonio Genovese, Stefano Sevini, Federica Luiselli, Donata Tieri, Paolo Capri, Miriam Salvioli, Stefano Vijg, Jan Suh, Yousin Delledonne, Massimo Testa, Roberto Franceschi, Claudio Journal Article Research Support, Non-U.S. Gov't United States Aging (Albany NY). 2013 May;5(5):373-85.
26
info:eu-repo/semantics/article
262
Garagnani, P; Giuliani, C; Pirazzini, C; Olivieri, F; Bacalini, ; M, G; Ostan, R; Mari, D; Passarino, G; Monti, D; Bonfigli, ; A, R; Boemi, M; Ceriell...espandi
01 Contributo su Rivista::01.01 Articolo in rivista
none
   Multiscale Immune System Simulator for the ONset of Type 2 Diabetes integrating genetic, metabolic and nutritional data
   MISSION-T2D
   FP7
   600803
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/20.500.14243/20237
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