In various cellular processes, bio-filaments like F-actin and F-tubulin are able to exploit chemical energy associated with polymerization to perform mechanicalwork against an obstacle loaded with an external force. The force-velocity relationship quantitatively summarizes the nature of this process. By a stochastic dynamical model, we give, together with the evolution of a staggered bundle of N-f rigid living filaments facing a loaded wall, the corresponding force-velocity relationship. We compute the evolution of the model in the infinite wall diffusion limit and in supercritical conditions (monomer density reduced by critical density (rho) over cap (1) > 1), and we show that this solution remains valid for moderate non-zero values of the ratio between the wall diffusion and the chemical time scales. We consider two classical protocols: the bundle is opposed either to a constant load or to an optical trap setup, characterized by a harmonic restoring force. The constant load case leads, for each F value, to a stationary velocity V-stat (F; N-f, (rho) over cap (1)) after a relaxation with characteristic time tau(micro)(F). When the bundle (initially taken as an assembly of filament seeds) is subjected to a harmonic restoring force (optical trap load), the bundle elongates and the load increases up to stalling over a characteristic time tau(OT). Extracted from this single experiment, the force-velocity V-OT (F; N-f, (rho) over cap (1)) curve is found to coincide with V-stat (F; N-f, (rho) over cap (1)), except at low loads. We show that this result follows from the adiabatic separation between tau(micro) and tau(OT), i. e., tau(micro) << tau(OT).

On the force-velocity relationship of a bundle of rigid bio-filaments

Ciccotti G;
2018

Abstract

In various cellular processes, bio-filaments like F-actin and F-tubulin are able to exploit chemical energy associated with polymerization to perform mechanicalwork against an obstacle loaded with an external force. The force-velocity relationship quantitatively summarizes the nature of this process. By a stochastic dynamical model, we give, together with the evolution of a staggered bundle of N-f rigid living filaments facing a loaded wall, the corresponding force-velocity relationship. We compute the evolution of the model in the infinite wall diffusion limit and in supercritical conditions (monomer density reduced by critical density (rho) over cap (1) > 1), and we show that this solution remains valid for moderate non-zero values of the ratio between the wall diffusion and the chemical time scales. We consider two classical protocols: the bundle is opposed either to a constant load or to an optical trap setup, characterized by a harmonic restoring force. The constant load case leads, for each F value, to a stationary velocity V-stat (F; N-f, (rho) over cap (1)) after a relaxation with characteristic time tau(micro)(F). When the bundle (initially taken as an assembly of filament seeds) is subjected to a harmonic restoring force (optical trap load), the bundle elongates and the load increases up to stalling over a characteristic time tau(OT). Extracted from this single experiment, the force-velocity V-OT (F; N-f, (rho) over cap (1)) curve is found to coincide with V-stat (F; N-f, (rho) over cap (1)), except at low loads. We show that this result follows from the adiabatic separation between tau(micro) and tau(OT), i. e., tau(micro) << tau(OT).
2018
Istituto Applicazioni del Calcolo ''Mauro Picone''
GROWING MICROTUBULES; SIMULATION; RATCHET
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/20.500.14243/353457
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