DNAJC17 is a heat shock protein (HSP40) family member, identified in mouse as susceptibility gene for congenital hypothyroidism. DNAJC17 knockout mouse embryos die prior to implantation. In humans, germline homozygous mutations in DNAJC17 have been found in syndromic retinal dystrophy patients, while heterozygous mutations represent candidate pathogenic events for myeloproliferative disorders. Despite widespread expression and involvement in human diseases, DNAJC17 function is still poorly understood. Herein, we have investigated its function through high-throughput transcriptomicand proteomic approaches. DNAJC17-depleted cells transcriptome highlighted genes involved in general functional categories, mainly related to gene expression. Conversely, DNAJC17 interactomecan be classified in very specific functional networks, with the most enriched one including proteins involved in splicing. Furthermore, several splicing-related interactors, were independently validated by co-immunoprecipitation and in vivo co-localization. Accordingly, co-localization of DNAJC17 with SC35, a marker of nuclear speckles, further supported its interaction with spliceosomal components.Lastly, DNAJC17 up-regulation enhanced splicing efficiency of minigene reporter in live cells, whileits knockdown induced perturbations of splicing efficiency at whole genome level, as demonstratedby specific analysis of RNAseq data. In conclusion, our study strongly suggests a role of DNAJC17in splicing-related processes and provides support to its recognized essential function in earlydevelopment.

DNAJC17 is localized in nuclear speckles and interacts with splicing machinery components

A. Pascarella;S. C. Credendino;B. Miranda;C. D'Ambrosio;A. Scaloni;
2018

Abstract

DNAJC17 is a heat shock protein (HSP40) family member, identified in mouse as susceptibility gene for congenital hypothyroidism. DNAJC17 knockout mouse embryos die prior to implantation. In humans, germline homozygous mutations in DNAJC17 have been found in syndromic retinal dystrophy patients, while heterozygous mutations represent candidate pathogenic events for myeloproliferative disorders. Despite widespread expression and involvement in human diseases, DNAJC17 function is still poorly understood. Herein, we have investigated its function through high-throughput transcriptomicand proteomic approaches. DNAJC17-depleted cells transcriptome highlighted genes involved in general functional categories, mainly related to gene expression. Conversely, DNAJC17 interactomecan be classified in very specific functional networks, with the most enriched one including proteins involved in splicing. Furthermore, several splicing-related interactors, were independently validated by co-immunoprecipitation and in vivo co-localization. Accordingly, co-localization of DNAJC17 with SC35, a marker of nuclear speckles, further supported its interaction with spliceosomal components.Lastly, DNAJC17 up-regulation enhanced splicing efficiency of minigene reporter in live cells, whileits knockdown induced perturbations of splicing efficiency at whole genome level, as demonstratedby specific analysis of RNAseq data. In conclusion, our study strongly suggests a role of DNAJC17in splicing-related processes and provides support to its recognized essential function in earlydevelopment.
2018
Istituto di Endocrinologia e Oncologia Sperimentale ''G. Salvatore'' - IEOS
Istituto per il Sistema Produzione Animale in Ambiente Mediterraneo - ISPAAM
Proteomics, RNA splicing
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Descrizione: DNAJC17 is localized in nuclear speckles and interacts with splicing machinery components
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/20.500.14243/370217
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