Virtual Research Environments (VREs) bridge the gap between the compute and storage infrastructure becoming available as the 'cloud', and the needs of researchers for tools supporting open science and analytics on ever larger datasets. In the AGINFRA PLUS project such a VRE, based on the D4Science platform, was examined to improve and test its capabilities for running large numbers of crop simulations at field level, based on the WOFOST-WISS model and Dutch input datasets from the AgroDataCube. Using the gCube DataMiner component of the VRE, and based on the Web Processing Service standard, a system has been implemented that can run such workloads successfully on an available cluster, and with good performance, providing summarized results to agronomists for further analysis. The methods used and the resulting implementation are briefly described in this paper. Overall the approach seems viable and opening the door to many follow-up implementation opportunities and further research. Some of them are indicated in more detail in the conclusions.

AGINFRA PLUS: running crop simulations on the D4Science distributed e-Infrastructure

Candela L;
2020

Abstract

Virtual Research Environments (VREs) bridge the gap between the compute and storage infrastructure becoming available as the 'cloud', and the needs of researchers for tools supporting open science and analytics on ever larger datasets. In the AGINFRA PLUS project such a VRE, based on the D4Science platform, was examined to improve and test its capabilities for running large numbers of crop simulations at field level, based on the WOFOST-WISS model and Dutch input datasets from the AgroDataCube. Using the gCube DataMiner component of the VRE, and based on the Web Processing Service standard, a system has been implemented that can run such workloads successfully on an available cluster, and with good performance, providing summarized results to agronomists for further analysis. The methods used and the resulting implementation are briefly described in this paper. Overall the approach seems viable and opening the door to many follow-up implementation opportunities and further research. Some of them are indicated in more detail in the conclusions.
2020
Istituto di Scienza e Tecnologie dell'Informazione "Alessandro Faedo" - ISTI
Inglese
Athanasiadis I., Frysinger S., Schimak G., Knibbe W.
Environmental Software Systems. Data Science in Action
ISESS 2020 - 13th International Symposium on Environmental Software Systems
978-3-030-39815-6
https://link.springer.com/chapter/10.1007%2F978-3-030-39815-6_8
Sì, ma tipo non specificato
5-7 February 2020
Wageningen, The Netherlands
Distributed computing
e-Infrastructure
Virtual Research Environment
Crop simulation model
WOFOST
4
open
Knapen M, J Rob; Lokers Rob, M; Candela, L; Janssen, S
273
info:eu-repo/semantics/conferenceObject
04 Contributo in convegno::04.01 Contributo in Atti di convegno
   Accelerating user-driven e-infrastructure innovation in Food Agriculture
   AGINFRA PLUS
   H2020
   731001
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/20.500.14243/374648
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