Xylella fastidiosa (Xf) is a vascular phytopathogenic bacterium native to the Americas, known for causing severe diseases and significant economic losses in important crops. In Europe,Xf is considered a quarantine pathogen. Since its first detection in 2013 in Italy,mandatory surveys to search for Xf across Europe have revealed the presence of three Xf subspecies (fastidiosa,multiplex,and pauca) in different outbreaks occurring in France,Spain,and Portugal.Xf subspecies sandyi and morus have not been associated with epidemic outbreaks in Europe;however, subspecies sandyi has been detected in intercepted plants imported from Costa Rica and Honduras. By combining data from the Oxford Nanopore Technologies and Illumina sequencing platforms,we obtained complete genomes for Xf strains CO33 and CFBP8478. Both strains belong to the subspecies sandyi and were isolated from coffee plants intercepted in Europe that were imported from Costa Rica. These two genome resources increase the scarce number of Xf genomes available belonging to the subspecies sandyi, which is crucial for comparative genomic analysis and population studies of this important plant-pathogenic bacterium.

Complete Circularized Genome Resources for Xylella fastidiosa subsp. sandyi Strains CO33 and CFBP8478

Giampetruzzi, Annalisa;Saponari, Maria;
2024

Abstract

Xylella fastidiosa (Xf) is a vascular phytopathogenic bacterium native to the Americas, known for causing severe diseases and significant economic losses in important crops. In Europe,Xf is considered a quarantine pathogen. Since its first detection in 2013 in Italy,mandatory surveys to search for Xf across Europe have revealed the presence of three Xf subspecies (fastidiosa,multiplex,and pauca) in different outbreaks occurring in France,Spain,and Portugal.Xf subspecies sandyi and morus have not been associated with epidemic outbreaks in Europe;however, subspecies sandyi has been detected in intercepted plants imported from Costa Rica and Honduras. By combining data from the Oxford Nanopore Technologies and Illumina sequencing platforms,we obtained complete genomes for Xf strains CO33 and CFBP8478. Both strains belong to the subspecies sandyi and were isolated from coffee plants intercepted in Europe that were imported from Costa Rica. These two genome resources increase the scarce number of Xf genomes available belonging to the subspecies sandyi, which is crucial for comparative genomic analysis and population studies of this important plant-pathogenic bacterium.
2024
Istituto per la Protezione Sostenibile delle Piante - IPSP - Sede Secondaria Bari
Istituto per la Protezione Sostenibile delle Piante - IPSP
bacterial subspecies
early detection
genome
plant interceptions
plasmids
subspecies sandyi
Xylella fastidiosa
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/20.500.14243/516516
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