The metric space paradigm has recently received attention as an important model of similarity in the area of Bioinformatics. Numerous techniques have been proposed to solve similarity (range or nearest-neighbor) queries on collections of data from metric domains. Though important representatives are outlined, this chapter is not trying to substitute existing comprehensive surveys. The main objective is to explain and prove by experiments that similarity searching is typically an expensive process which does not easily scale to very large volumes of data, thus distributed architectures able to exploit parallelism must be employed.

Efficiency and scalability issues in metric access methods

Gennaro C;
2008

Abstract

The metric space paradigm has recently received attention as an important model of similarity in the area of Bioinformatics. Numerous techniques have been proposed to solve similarity (range or nearest-neighbor) queries on collections of data from metric domains. Though important representatives are outlined, this chapter is not trying to substitute existing comprehensive surveys. The main objective is to explain and prove by experiments that similarity searching is typically an expensive process which does not easily scale to very large volumes of data, thus distributed architectures able to exploit parallelism must be employed.
2008
Istituto di Scienza e Tecnologie dell'Informazione "Alessandro Faedo" - ISTI
978-3-540-75766-5
Metric spaces
Similarity search
Index structures
Sequence similarity
Bioinformatics
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/20.500.14243/97884
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