GIORGINO, TONI
GIORGINO, TONI
Istituto di Biofisica - IBF - Sede Secondaria Milano
Enhancing the Accuracy of Dynamic Time Warping by Integrating Stratigraphic Constraints Into the Automated Correlation of Sedimentary Sequences
2025 Samant, Rohit; Giorgino, Toni; Jarochowska, Emilia; De Vleeschouwer, David
Large scale investigation of GPCR molecular dynamics data uncovers allosteric sites and lateral gateways
2025 Aranda-García, David; Stepniewski, Tomasz Maciej; Torrens-Fontanals, Mariona; García-Recio, Adrian; Lopez-Balastegui, Marta; Medel-Lacruz, Brian; Morales-Pastor, Adrián; Peralta-García, Alejandro; Dieguez-Eceolaza, Miguel; Sotillo-Nuñez, David; Ding, Tianyi; Drabek, Matthäus; Jacquemard, Célien; Jakowiecki, Jakub; Jespers, Willem; Jiménez-Rosés, Mireia; Jun-Yu-Lim, Víctor; Nicoli, Alessandro; Orzel, Urszula; Shahraki, Aida; Tiemann, Johanna K. S.; Ledesma-Martin, Vicente; Nerín-Fonz, Francho; Suárez-Dou, Sergio; Canal, Oriol; Pándy-Szekeres, Gáspár; Mao, Jiafei; Gloriam, David E.; Kellenberger, Esther; Latek, Dorota; Guixà-González, Ramon; Gutiérrez-de-Terán, Hugo; Tikhonova, Irina G.; Hildebrand, Peter W.; Filizola, Marta; Babu, M. Madan; Di Pizio, Antonella; Filipek, Slawomir; Kolb, Peter; Cordomi, Arnau; Giorgino, Toni; Marti-Solano, Maria; Selent, Jana
PLUMED Tutorials: A collaborative, community-driven learning ecosystem
2025 Tribello, Gareth A.; Bonomi, Massimiliano; Bussi, Giovanni; Camilloni, Carlo; Armstrong, Blake I.; Arsiccio, Andrea; Aureli, Simone; Ballabio, Federico; Bernetti, Mattia; Bonati, Luigi; Brookes, Samuel G. H.; Brotzakis, Z. Faidon; Capelli, Riccardo; Ceriotti, Michele; Chan, Kam-Tung; Cossio, Pilar; Dasetty, Siva; Donadio, Davide; Ensing, Bernd; Ferguson, Andrew L.; Fraux, Guillaume; Gale, Julian D.; Gervasio, Francesco Luigi; Giorgino, Toni; Herringer, Nicholas S. M.; Hocky, Glen M.; Hoff, Samuel E.; Invernizzi, Michele; Languin-Cattoën, Olivier; Leone, Vanessa; Limongelli, Vittorio; Lopez-Acevedo, Olga; Marinelli, Fabrizio; Febrer Martinez, Pedro; Masetti, Matteo; Mehdi, Shams; Michaelides, Angelos; Murtada, Mhd Hussein; Parrinello, Michele; Piaggi, Pablo M.; Pietropaolo, Adriana; Pietrucci, Fabio; Pipolo, Silvio; Pritchard, Claire; Raiteri, Paolo; Raniolo, Stefano; Rapetti, Daniele; Rizzi, Valerio; Rydzewski, Jakub; Salvalaglio, Matteo; Schran, Christoph; Seal, Aniruddha; Shayesteh Zadeh, Armin; Silva, Tomás F. D.; Spiwok, Vojtěch; Stirnemann, Guillaume; Sucerquia, Daniel; Tiwary, Pratyush; Valsson, Omar; Vendruscolo, Michele; Voth, Gregory A.; White, Andrew D.; Wu, Jiangbo
The influence of metformin treatment on the circulating proteome
2025 Connolly, Ben; Mccreight, Laura; Slieker, Roderick C.; Bedair, Khaled F.; Donnelly, Louise; De Klerk, Juliette A.; Beulens, Joline W. J.; Elders, Petra J. M.; Bergström, Göran; Hong, Mun-Gwan; Koivula, Robert W.; Franks, Paul W.; Schwenk, Jochen M.; Gummesson, Anders; Pearson, Ewan R.; ‘t Hart, Leen M.; Abdalla, Moustafa; Adam, Jonathan; Adamski, Jerzy; Adragni, Kofi; Allesøe, Rosa Lundbye L.; Allin, Kristine H.; Artati, Anna A.; Arumugam, Manimozhiyan; Atabaki Pasdar, Naeimeh; Baltauss, Tania; Banasik, Karina; Barnett, Anna; Baum, Patrick; Bell, Jimmy D.; Bianzano, Susanna; Bizzotto, Roberto; Bonnefond, Amelie; Brorsson, Caroline Anna A.; Brown, Andrew A.; Brunak, Søren; Cabrelli, Louise; Caiazzo, Robert; Cederberg, Henna; Chabanova, Elizaveta; Clos-Garcia, Marc; Dale, Matilda; Davtian, David; Dawed, Adem Y.; De Masi, Federico; De Preville, Nathalie; Dekkers, Koen F.; Deshmukh, Harshal A.; Dings, Christiane; Dutta, Avirup; Ehrhardt, Beate; Engelbrechtsen, Line; Eriksen, Rebeca; Fan, Yong; Fernandez, Juan; Ferrer, Jorge; Fitipaldi, Hugo; Forgie, Ian M.; Forman, Annemette; Frau, Francesca; Froguel, Philippe; Frost, Gary; Gassenhuber, Johann; Giordano, Giuseppe (Nick) N.; Giorgino, Toni; Gough, Stephen; Grallert, Harald; Grempler, Rolf; Groeneveld, Lenka; Groop, Leif; Gudmundsdóttir, Valborg; Gupta, Ramneek; Haid, Mark; Hansen, Torben; Hansen, Tue H.; Hattersley, Andrew T.; Haussler, Ragna; Heggie, Alison J.; Hennige, Anita M.; Hill, Anita V.; Holl, Reinhard W.; Hudson, Michelle; Jablonka, Bernd; Jacobsen, Ulrik Plesner; Jennison, Christopher; Johansen, Joachim; Jones, Angus G.; Karaderi, Tugce; Kaye, Jane; Kennedy, Gwen; Klintenberg, Maria; Koivula, Robert W.; Kokkola, Tarja; Koopman, Anitra D.; Kurbasic, Azra; Kuulasmaa, Teemu; Laakso, Markku; Lehr, Thorsten; Loftus, Heather; Lundgaard, Agnete Troen T.; Lyu, Liwei; Mahajan, Anubha; Mari, Andrea; Mazzoni, Gianluca; Mccarthy, Mark I.; Mcdonald, Timothy J.; Mcevoy, Donna; Mcrobert, Nicky; Mcvittie, Ian; Mourby, Miranda; Musholt, Petra; Mutie, Pascal; Nice, Rachel; Nicolay, Claudia; Nijpels, Giel; Nilsson, Birgitte; Palmer, Colin N.; Pattou, Francois; Pavo, Imre; Pedersen, Helle K.; Pedersen, Oluf; Perry, Mandy H.; Pomares-Millan, Hugo; Prehn, Cornelia P.; Ramisch, Anna; Rasmussen, Simon; Raverdi, Violeta; Ridderstråle, Martin; Robertson, Neil; Rodriquez, Marianne; Ruetten, Hartmut; Rutters, Femke; Sackett, Peter; Scherer, Nina; Shah, Nisha; Sharma, Sapna; Sihinevich, Iryna; Sondertoft, Nadja B.; Staerfeldt, Hans-Henrik; Steckel-Hamann, Birgit; Teare, Harriet; Thomas, Cecilia Engel E.; Thomas, Elizabeth Louise L.; Thomas, Melissa K.; Thomsen, Henrik S.; Thorand, Barbara; Thorne, Claire E.; Tillner, Joachim; Tsirigos, Konstantinos D.; Tura, Andrea; Uhlen, Mathias; Van Oort, Sabine; Vangipurapu, Jagadish; Verkindt, Helene; Vestergaard, Henrik; Viñuela, Ana; Vogt, Josef K.; Wad Sackett, Peter W.; Walker, Mark; Wesolowska-Andersen, Agata; Whitcher, Brandon; White, Margaret W.; Efanov, Alexander; Giordano, Giuseppe N.; Bouland, Gerard A.; Burdet, Frédéric; Dragan, Iulian; Festa, Andreas; Hansen, Michael K.; Kuznetsov, Dmitry; Mehl, Florence; Marek, Diana; Pavo, Imre; Duffin, Kevin; Syed, Samreen K.; Shaw, Janice L.; Cabrera, Over; Pullen, Timothy J.; Thorens, Bernard; Ibberson, Mark; Rutter, Guy A.
Advantages of DTW windowing function in automated correlation of stratigraphic time series
2024 Samant, Rohit; Giorgino, Toni; Jarochowska, Emilia; De Vleeschouwer, David
AlloViz: a tool for the calculation and visualisation of protein allosteric communication networks
2024 Nerín-Fonz, Francho; Caprai, Camilla; Morales-Pastor, Adrián; Lopez-Balastegui, Marta; Aranda-García, David; Giorgino, Toni; Selent, Jana
mdCATH: A Large-Scale MD Dataset for Data-Driven Computational Biophysics
2024 Mirarchi, Antonio; Giorgino, Toni; De Fabritiis, Gianni
Self-organizing maps of unbiased ligand–target binding pathways and kinetics
2024 Callea, Lara; Caprai, Camilla; Bonati, Laura; Giorgino, Toni; Motta, Stefano
The antipsychotic drug lurasidone inhibits coronaviruses by affecting multiple targets
2024 Baroni, Sara; Carletti, Tea; Donalisio, Manuela; Arduino, Irene; Cazzaniga, Irene; Giorgino, Toni; Esposito, Francesca; Porta, Alessia; Diomede, Luisa; De Luigi, Ada; Gobbi, Marco; Lembo, David; Marcello, Alessandro; Tramontano, Enzo; Milani, Mario; Mastrangelo, Eloise
Author Correction: Discovery of drug–omics associations in type 2 diabetes with generative deep-learning models (Nature Biotechnology, (2023), 41, 3, (399-408), 10.1038/s41587-022-01520-x)
2023 Allesoe, R. L.; Lundgaard, A. T.; Hernandez Medina, R.; Aguayo-Orozco, A.; Johansen, J.; Nissen, J. N.; Brorsson, C.; Mazzoni, G.; Niu, L.; Biel, J. H.; Leal Rodriguez, C.; Brasas, V.; Webel, H.; Benros, M. E.; Pedersen, A. G.; Chmura, P. J.; Jacobsen, U. P.; Mari, A.; Koivula, R.; Mahajan, A.; Vinuela, A.; Tajes, J. F.; Sharma, S.; Haid, M.; Hong, M. -G.; Musholt, P. B.; De Masi, F.; Vogt, J.; Pedersen, H. K.; Gudmundsdottir, V.; Jones, A.; Kennedy, G.; Bell, J.; Thomas, E. L.; Frost, G.; Thomsen, H.; Hansen, E.; Hansen, T. H.; Vestergaard, H.; Muilwijk, M.; Blom, M. T.; 't Hart, L. M.; Pattou, F.; Raverdy, V.; Brage, S.; Kokkola, T.; Heggie, A.; Mcevoy, D.; Mourby, M.; Kaye, J.; Hattersley, A.; Mcdonald, T.; Ridderstrale, M.; Walker, M.; Forgie, I.; Giordano, G. N.; Pavo, I.; Ruetten, H.; Pedersen, O.; Hansen, T.; Dermitzakis, E.; Franks, P. W.; Schwenk, J. M.; Adamski, J.; Mccarthy, M. I.; Pearson, E.; Banasik, K.; Rasmussen, S.; Brunak, S.; Froguel, P.; Thomas, C. E.; Haussler, R.; Beulens, J.; Rutters, F.; Nijpels, G.; van Oort, S.; Groeneveld, L.; Elders, P.; Giorgino, T.; Rodriquez, M.; Nice, R.; Perry, M.; Bianzano, S.; Graefe-Mody, U.; Hennige, A.; Grempler, R.; Baum, P.; Staerfeldt, H. -H.; Shah, N.; Teare, H.; Ehrhardt, B.; Tillner, J.; Dings, C.; Lehr, T.; Scherer, N.; Sihinevich, I.; Cabrelli, L.; Loftus, H.; Bizzotto, R.; Tura, A.; Dekkers, K.; van Leeuwen, N.; Groop, L.; Slieker, R.; Ramisch, A.; Jennison, C.; Mcvittie, I.; Frau, F.; Steckel-Hamann, B.; Adragni, K.; Thomas, M.; Pasdar, N. A.; Fitipaldi, H.; Kurbasic, A.; Mutie, P.; Pomares-Millan, H.; Bonnefond, A.; Canouil, M.; Caiazzo, R.; Verkindt, H.; Holl, R.; Kuulasmaa, T.; Deshmukh, H.; Cederberg, H.; Laakso, M.; Vangipurapu, J.; Dale, M.; Thorand, B.; Nicolay, C.; Fritsche, A.; Hill, A.; Hudson, M.; Thorne, C.; Allin, K.; Arumugam, M.; Jonsson, A.; Engelbrechtsen, L.; Forman, A.; Dutta, A.; Sondertoft, N.; Fan, Y.; Gough, S.; Robertson, N.; Mcrobert, N.; Wesolowska-Andersen, A.; Brown, A.; Davtian, D.; Dawed, A.; Donnelly, L.; Palmer, C.; White, M.; Ferrer, J.; Whitcher, B.; Artati, A.; Prehn, C.; Adam, J.; Grallert, H.; Gupta, R.; Sackett, P. W.; Nilsson, B.; Tsirigos, K.; Eriksen, R.; Jablonka, B.; Uhlen, M.; Gassenhuber, J.; Baltauss, T.; de Preville, N.; Klintenberg, M.; Abdalla, M.
Discovery of drug-omics associations in type 2 diabetes with generative deep-learning models
2023 Allesøe, Rosa Lundbye; Lundgaard, Agnete Troen; Hernández Medina, Ricardo; Aguayo-Orozco, Alejandro; Johansen, Joachim; Nissen, Jakob Nybo; Brorsson, Caroline; Mazzoni, Gianluca; Niu, Lili; Biel, Jorge Hernansanz; Brasas, Valentas; Webel, Henry; Benros, Michael Eriksen; Pedersen, Anders Gorm; Chmura, Piotr Jaroslaw; Jacobsen, Ulrik Plesner; Mari, Andrea; Koivula, Robert; Mahajan, Anubha; Vinuela, Ana; Tajes, Juan Fernandez; Sharma, Sapna; Haid, Mark; Hong, Mun Gwan; Musholt, Petra B.; De Masi, Federico; Vogt, Josef; Pedersen, Helle Krogh; Gudmundsdottir, Valborg; Jones, Angus; Kennedy, Gwen; Bell, Jimmy; Thomas, E. Louise; Frost, Gary; Thomsen, Henrik; Hansen, Elizaveta; Hansen, Tue Haldor; Vestergaard, Henrik; Muilwijk, Mirthe; Blom, Marieke T.; 't Hart, Leen M.; Pattou, Francois; Raverdy, Violeta; Brage, Soren; Kokkola, Tarja; Heggie, Alison; Mcevoy, Donna; Mourby, Miranda; Kaye, Jane; Hattersley, Andrew; Mcdonald, Timothy; Ridderstråle, Martin; Walker, Mark; Forgie, Ian; Giordano, Giuseppe N.; Pavo, Imre; Ruetten, Hartmut; Pedersen, Oluf; Hansen, Torben; Dermitzakis, Emmanouil; Franks, Paul W.; Schwenk, Jochen M.; Adamski, Jerzy; Mccarthy, Mark I.; Pearson, Ewan; Banasik, Karina; Rasmussen, Simon; Brunak, Søren; Froguel, Philippe; Thomas, Cecilia Engel; Haussler, Ragna; Beulens, Joline; Rutters, Femke; Nijpels, Giel; van Oort, Sabine; Groeneveld, Lenka; Elders, Petra; Giorgino, Toni; Rodriquez, Marianne; Nice, ; Cristina Leal Rodríguez, Rachel; Perry, Mandy; Bianzano, Susanna; Graefe-Mody, Ulrike; Hennige, Anita; Grempler, Rolf; Baum, Patrick; Stærfeldt, Hans Henrik; Shah, Nisha; Teare, Harriet; Ehrhardt, Beate; Tillner, Joachim; Dings, Christiane; Lehr, Thorsten; Scherer, Nina; Sihinevich, Iryna; Cabrelli, Louise; Loftus, Heather; Bizzotto, Roberto; Tura, Andrea; Dekkers, Koen
Machine learning coarse-grained potentials of protein thermodynamics
2023 Majewski, Maciej; Pérez, Adrià; Thölke, Philipp; Doerr, Stefan; Charron, Nicholas E.; Giorgino, Toni; Husic, Brooke E.; Clementi, Cecilia; Noe, Frank; De Fabritiis, Gianni
Pharmacogenomics of GLP-1 receptor agonists: a genome-wide analysis of observational data and large randomised controlled trials
2023 Dawed Adem, Y; Mari, Andrea; Brown, Andrew; McDonald Timothy, J; Li, Lin; Wang, Shuaicheng; Hong Mun, Gwan; Sharma, Sapna; Robertson Neil, R; Mahajan, Anubha; Wang, Xuan; Walker, Mark; Gough, Stephen; Hart Leen, M'T; Zhou, Kaixin; Forgie, Ian; Ruetten, Hartmut; Pavo, Imre; Bhatnagar, Pallav; Jones Angus, G; Pearson Ewan, R; 't Hart, L M; Abdalla, M; Adam, J; Adamski, J; Adragni, K; Allin, K H; Arumugam, M; Atabaki Pasdar, N; Baltauss, T; Banasik, K B; Baum, P; Bell, J D; Bergstrom, M; Beulens, J W; Bianzano, S; Bizzotto, R; Bonneford, A; Brorsson, C AB; Brown, A A; Brunak, S B; Cabrelli, L; Caiazzo, R; Canouil, M; Dale, M; Davtian, D; Dawed Adem, Y; De Masi, F M; de Preville, N; Dekkers, K F; Dermitzakis, E T; Deshmukh, H A; Dings, C; Donnelly, L; Dutta, A; Ehrhardt, B; Elders, P JM; Engel Thomas, C ET; Engelbrechtsen, L; Eriksen, R G; Eriksen, R E; Fan, Y; Fernandez, J; Ferrer, J; Fitipaldi, H; Forgie, Ian; Forman, A; Franks, P W; Frau, F; Fritsche, A; Froguel, P; Frost, G; Gassenhuber, J; Giordano, G N; Giorgino, T; Gough, S; Graefemody, U; Grallert, H; Grempler, R; Groeneveld, L; Groop, L; Gudmundsdóttir, V G; Gupta, R G; Haid, M; Hansen, T; Hansen, T H; Hattersley, A T; Haussler, R S; Heggie, A J; Hennige, A M; Hill, A V; Holl, R W; Hong, M G; Hudson, M; Jablonka, B; Jennison, C; Jiao, J; Johansen, J J; Jones, A G; Jonsson, A
A Prognostic Model to Predict Survival After 6 Months of Ruxolitinib in Patients with Myelofibrosis
2022 Maffioli Margherita; Mora Barbara; Ball Somedeb; Iurlo Alessandra; Elli Elena Maria; Finazzi Maria Chiara; Polverelli Nicola; Rumi Elisa; Caramella Marianna; Carraro Maria Cristina; D'Adda Mariella; Molteni Alfredo; Sissa Cinzia; Lunghi Francesca; Vismara Alessandro; Ubezio Marta; Guidetti Anna; Caberlon Sabrina; Anghilieri Michela; Komrokji Rami S.; Cattaneo Daniele; Della Porta Matteo Giovanni; Giorgino Toni; Bertù Lorenza; Brociner Marco; Kuykendall Andrew T;Passamonti Francesco
Classification Model for the Second Extracellular Loop of Class A GPCRs
2022 Nicoli, Alessandro; Dunkel, Andreas; Giorgino, Toni; de Graaf, Chris; Di Pizio, Antonella
Evidence of Covid-19 lockdown effects on riverine dissolved organic matter dynamics provides a proof-of-concept for needed regulations of anthropogenic emissions
2022 Retelletti Brogi, S.; Cossarini, G.; Bachi, G.; Balestra, C.; Camatti, E.; Casotti, R.; Checcucci, G.; Colella, S.; Evangelista, V.; Falcini, F.; Francocci, F.; Giorgino, T.; Margiotta, F.; Ribera d'Alcalà, M.; Sprovieri, M.; Vestri, S.; Santinelli, C.
Maternal immune activation leads to defective brain-blood vessels and intracerebral hemorrhages in male offspring
2022 Rasile, Marco; Lauranzano, Eliana; Faggiani, Elisa; Ravanelli Margherita, M; Colombo Federico, S; Mirabella, Filippo; Corradini, Irene; Malosio Maria, L; Borreca, Antonella; Focchi, Elisa; Pozzi, Davide; Giorgino, Toni; Barajon, Isabella; Matteoli, Michela
SCoV2-MD: a database for the dynamics of the SARS-CoV-2 proteome and variant impact predictions
2022 Torrens-Fontanals, Mariona; Peralta-García, Alejandro; Talarico, Carmine; Guixà-González, Ramon; Giorgino, Toni; Selent, Jana
A novel hotspot of gelsolin instability triggers an alternative mechanism of amyloid aggregation
2021 Bollati, Michela; Diomede, Luisa; Giorgino, Toni; Natale, Carmina; Fagnani, Elisa; Boniardi, Irene; Barbiroli, Alberto; Alemani, Rebecca; Beeg, Marten; Gobbi, Marco; Fakin, Ana; Mastrangelo, Eloise; MILANI DE MAYO DE MARI, Mario; Presciuttini, Gianluca; Gabellieri, Edi; Cioni, Patrizia; DE ROSA, Matteo
TorchMD: A Deep Learning Framework for Molecular Simulations
2021 Doerr, Stefan; Majewski, Maciej; Pérez, Adrià; Krämer, Andreas; Clementi, Cecilia; Noe, Frank; Giorgino, Toni; De Fabritiis, Gianni
| Titolo | Data di pubblicazione | Autore(i) | File |
|---|---|---|---|
| Enhancing the Accuracy of Dynamic Time Warping by Integrating Stratigraphic Constraints Into the Automated Correlation of Sedimentary Sequences | 1-gen-2025 | Samant, Rohit; Giorgino, Toni; Jarochowska, Emilia; De Vleeschouwer, David | |
| Large scale investigation of GPCR molecular dynamics data uncovers allosteric sites and lateral gateways | 1-gen-2025 | Aranda-García, David; Stepniewski, Tomasz Maciej; Torrens-Fontanals, Mariona; García-Recio, Adrian; Lopez-Balastegui, Marta; Medel-Lacruz, Brian; Morales-Pastor, Adrián; Peralta-García, Alejandro; Dieguez-Eceolaza, Miguel; Sotillo-Nuñez, David; Ding, Tianyi; Drabek, Matthäus; Jacquemard, Célien; Jakowiecki, Jakub; Jespers, Willem; Jiménez-Rosés, Mireia; Jun-Yu-Lim, Víctor; Nicoli, Alessandro; Orzel, Urszula; Shahraki, Aida; Tiemann, Johanna K. S.; Ledesma-Martin, Vicente; Nerín-Fonz, Francho; Suárez-Dou, Sergio; Canal, Oriol; Pándy-Szekeres, Gáspár; Mao, Jiafei; Gloriam, David E.; Kellenberger, Esther; Latek, Dorota; Guixà-González, Ramon; Gutiérrez-de-Terán, Hugo; Tikhonova, Irina G.; Hildebrand, Peter W.; Filizola, Marta; Babu, M. Madan; Di Pizio, Antonella; Filipek, Slawomir; Kolb, Peter; Cordomi, Arnau; Giorgino, Toni; Marti-Solano, Maria; Selent, Jana | |
| PLUMED Tutorials: A collaborative, community-driven learning ecosystem | 1-gen-2025 | Tribello, Gareth A.; Bonomi, Massimiliano; Bussi, Giovanni; Camilloni, Carlo; Armstrong, Blake I.; Arsiccio, Andrea; Aureli, Simone; Ballabio, Federico; Bernetti, Mattia; Bonati, Luigi; Brookes, Samuel G. H.; Brotzakis, Z. Faidon; Capelli, Riccardo; Ceriotti, Michele; Chan, Kam-Tung; Cossio, Pilar; Dasetty, Siva; Donadio, Davide; Ensing, Bernd; Ferguson, Andrew L.; Fraux, Guillaume; Gale, Julian D.; Gervasio, Francesco Luigi; Giorgino, Toni; Herringer, Nicholas S. M.; Hocky, Glen M.; Hoff, Samuel E.; Invernizzi, Michele; Languin-Cattoën, Olivier; Leone, Vanessa; Limongelli, Vittorio; Lopez-Acevedo, Olga; Marinelli, Fabrizio; Febrer Martinez, Pedro; Masetti, Matteo; Mehdi, Shams; Michaelides, Angelos; Murtada, Mhd Hussein; Parrinello, Michele; Piaggi, Pablo M.; Pietropaolo, Adriana; Pietrucci, Fabio; Pipolo, Silvio; Pritchard, Claire; Raiteri, Paolo; Raniolo, Stefano; Rapetti, Daniele; Rizzi, Valerio; Rydzewski, Jakub; Salvalaglio, Matteo; Schran, Christoph; Seal, Aniruddha; Shayesteh Zadeh, Armin; Silva, Tomás F. D.; Spiwok, Vojtěch; Stirnemann, Guillaume; Sucerquia, Daniel; Tiwary, Pratyush; Valsson, Omar; Vendruscolo, Michele; Voth, Gregory A.; White, Andrew D.; Wu, Jiangbo | |
| The influence of metformin treatment on the circulating proteome | 1-gen-2025 | Connolly, Ben; Mccreight, Laura; Slieker, Roderick C.; Bedair, Khaled F.; Donnelly, Louise; De Klerk, Juliette A.; Beulens, Joline W. J.; Elders, Petra J. M.; Bergström, Göran; Hong, Mun-Gwan; Koivula, Robert W.; Franks, Paul W.; Schwenk, Jochen M.; Gummesson, Anders; Pearson, Ewan R.; ‘t Hart, Leen M.; Abdalla, Moustafa; Adam, Jonathan; Adamski, Jerzy; Adragni, Kofi; Allesøe, Rosa Lundbye L.; Allin, Kristine H.; Artati, Anna A.; Arumugam, Manimozhiyan; Atabaki Pasdar, Naeimeh; Baltauss, Tania; Banasik, Karina; Barnett, Anna; Baum, Patrick; Bell, Jimmy D.; Bianzano, Susanna; Bizzotto, Roberto; Bonnefond, Amelie; Brorsson, Caroline Anna A.; Brown, Andrew A.; Brunak, Søren; Cabrelli, Louise; Caiazzo, Robert; Cederberg, Henna; Chabanova, Elizaveta; Clos-Garcia, Marc; Dale, Matilda; Davtian, David; Dawed, Adem Y.; De Masi, Federico; De Preville, Nathalie; Dekkers, Koen F.; Deshmukh, Harshal A.; Dings, Christiane; Dutta, Avirup; Ehrhardt, Beate; Engelbrechtsen, Line; Eriksen, Rebeca; Fan, Yong; Fernandez, Juan; Ferrer, Jorge; Fitipaldi, Hugo; Forgie, Ian M.; Forman, Annemette; Frau, Francesca; Froguel, Philippe; Frost, Gary; Gassenhuber, Johann; Giordano, Giuseppe (Nick) N.; Giorgino, Toni; Gough, Stephen; Grallert, Harald; Grempler, Rolf; Groeneveld, Lenka; Groop, Leif; Gudmundsdóttir, Valborg; Gupta, Ramneek; Haid, Mark; Hansen, Torben; Hansen, Tue H.; Hattersley, Andrew T.; Haussler, Ragna; Heggie, Alison J.; Hennige, Anita M.; Hill, Anita V.; Holl, Reinhard W.; Hudson, Michelle; Jablonka, Bernd; Jacobsen, Ulrik Plesner; Jennison, Christopher; Johansen, Joachim; Jones, Angus G.; Karaderi, Tugce; Kaye, Jane; Kennedy, Gwen; Klintenberg, Maria; Koivula, Robert W.; Kokkola, Tarja; Koopman, Anitra D.; Kurbasic, Azra; Kuulasmaa, Teemu; Laakso, Markku; Lehr, Thorsten; Loftus, Heather; Lundgaard, Agnete Troen T.; Lyu, Liwei; Mahajan, Anubha; Mari, Andrea; Mazzoni, Gianluca; Mccarthy, Mark I.; Mcdonald, Timothy J.; Mcevoy, Donna; Mcrobert, Nicky; Mcvittie, Ian; Mourby, Miranda; Musholt, Petra; Mutie, Pascal; Nice, Rachel; Nicolay, Claudia; Nijpels, Giel; Nilsson, Birgitte; Palmer, Colin N.; Pattou, Francois; Pavo, Imre; Pedersen, Helle K.; Pedersen, Oluf; Perry, Mandy H.; Pomares-Millan, Hugo; Prehn, Cornelia P.; Ramisch, Anna; Rasmussen, Simon; Raverdi, Violeta; Ridderstråle, Martin; Robertson, Neil; Rodriquez, Marianne; Ruetten, Hartmut; Rutters, Femke; Sackett, Peter; Scherer, Nina; Shah, Nisha; Sharma, Sapna; Sihinevich, Iryna; Sondertoft, Nadja B.; Staerfeldt, Hans-Henrik; Steckel-Hamann, Birgit; Teare, Harriet; Thomas, Cecilia Engel E.; Thomas, Elizabeth Louise L.; Thomas, Melissa K.; Thomsen, Henrik S.; Thorand, Barbara; Thorne, Claire E.; Tillner, Joachim; Tsirigos, Konstantinos D.; Tura, Andrea; Uhlen, Mathias; Van Oort, Sabine; Vangipurapu, Jagadish; Verkindt, Helene; Vestergaard, Henrik; Viñuela, Ana; Vogt, Josef K.; Wad Sackett, Peter W.; Walker, Mark; Wesolowska-Andersen, Agata; Whitcher, Brandon; White, Margaret W.; Efanov, Alexander; Giordano, Giuseppe N.; Bouland, Gerard A.; Burdet, Frédéric; Dragan, Iulian; Festa, Andreas; Hansen, Michael K.; Kuznetsov, Dmitry; Mehl, Florence; Marek, Diana; Pavo, Imre; Duffin, Kevin; Syed, Samreen K.; Shaw, Janice L.; Cabrera, Over; Pullen, Timothy J.; Thorens, Bernard; Ibberson, Mark; Rutter, Guy A. | |
| Advantages of DTW windowing function in automated correlation of stratigraphic time series | 1-gen-2024 | Samant, Rohit; Giorgino, Toni; Jarochowska, Emilia; De Vleeschouwer, David | |
| AlloViz: a tool for the calculation and visualisation of protein allosteric communication networks | 1-gen-2024 | Nerín-Fonz, Francho; Caprai, Camilla; Morales-Pastor, Adrián; Lopez-Balastegui, Marta; Aranda-García, David; Giorgino, Toni; Selent, Jana | |
| mdCATH: A Large-Scale MD Dataset for Data-Driven Computational Biophysics | 1-gen-2024 | Mirarchi, Antonio; Giorgino, Toni; De Fabritiis, Gianni | |
| Self-organizing maps of unbiased ligand–target binding pathways and kinetics | 1-gen-2024 | Callea, Lara; Caprai, Camilla; Bonati, Laura; Giorgino, Toni; Motta, Stefano | |
| The antipsychotic drug lurasidone inhibits coronaviruses by affecting multiple targets | 1-gen-2024 | Baroni, Sara; Carletti, Tea; Donalisio, Manuela; Arduino, Irene; Cazzaniga, Irene; Giorgino, Toni; Esposito, Francesca; Porta, Alessia; Diomede, Luisa; De Luigi, Ada; Gobbi, Marco; Lembo, David; Marcello, Alessandro; Tramontano, Enzo; Milani, Mario; Mastrangelo, Eloise | |
| Author Correction: Discovery of drug–omics associations in type 2 diabetes with generative deep-learning models (Nature Biotechnology, (2023), 41, 3, (399-408), 10.1038/s41587-022-01520-x) | 1-gen-2023 | Allesoe, R. L.; Lundgaard, A. T.; Hernandez Medina, R.; Aguayo-Orozco, A.; Johansen, J.; Nissen, J. N.; Brorsson, C.; Mazzoni, G.; Niu, L.; Biel, J. H.; Leal Rodriguez, C.; Brasas, V.; Webel, H.; Benros, M. E.; Pedersen, A. G.; Chmura, P. J.; Jacobsen, U. P.; Mari, A.; Koivula, R.; Mahajan, A.; Vinuela, A.; Tajes, J. F.; Sharma, S.; Haid, M.; Hong, M. -G.; Musholt, P. B.; De Masi, F.; Vogt, J.; Pedersen, H. K.; Gudmundsdottir, V.; Jones, A.; Kennedy, G.; Bell, J.; Thomas, E. L.; Frost, G.; Thomsen, H.; Hansen, E.; Hansen, T. H.; Vestergaard, H.; Muilwijk, M.; Blom, M. T.; 't Hart, L. M.; Pattou, F.; Raverdy, V.; Brage, S.; Kokkola, T.; Heggie, A.; Mcevoy, D.; Mourby, M.; Kaye, J.; Hattersley, A.; Mcdonald, T.; Ridderstrale, M.; Walker, M.; Forgie, I.; Giordano, G. N.; Pavo, I.; Ruetten, H.; Pedersen, O.; Hansen, T.; Dermitzakis, E.; Franks, P. W.; Schwenk, J. M.; Adamski, J.; Mccarthy, M. I.; Pearson, E.; Banasik, K.; Rasmussen, S.; Brunak, S.; Froguel, P.; Thomas, C. E.; Haussler, R.; Beulens, J.; Rutters, F.; Nijpels, G.; van Oort, S.; Groeneveld, L.; Elders, P.; Giorgino, T.; Rodriquez, M.; Nice, R.; Perry, M.; Bianzano, S.; Graefe-Mody, U.; Hennige, A.; Grempler, R.; Baum, P.; Staerfeldt, H. -H.; Shah, N.; Teare, H.; Ehrhardt, B.; Tillner, J.; Dings, C.; Lehr, T.; Scherer, N.; Sihinevich, I.; Cabrelli, L.; Loftus, H.; Bizzotto, R.; Tura, A.; Dekkers, K.; van Leeuwen, N.; Groop, L.; Slieker, R.; Ramisch, A.; Jennison, C.; Mcvittie, I.; Frau, F.; Steckel-Hamann, B.; Adragni, K.; Thomas, M.; Pasdar, N. A.; Fitipaldi, H.; Kurbasic, A.; Mutie, P.; Pomares-Millan, H.; Bonnefond, A.; Canouil, M.; Caiazzo, R.; Verkindt, H.; Holl, R.; Kuulasmaa, T.; Deshmukh, H.; Cederberg, H.; Laakso, M.; Vangipurapu, J.; Dale, M.; Thorand, B.; Nicolay, C.; Fritsche, A.; Hill, A.; Hudson, M.; Thorne, C.; Allin, K.; Arumugam, M.; Jonsson, A.; Engelbrechtsen, L.; Forman, A.; Dutta, A.; Sondertoft, N.; Fan, Y.; Gough, S.; Robertson, N.; Mcrobert, N.; Wesolowska-Andersen, A.; Brown, A.; Davtian, D.; Dawed, A.; Donnelly, L.; Palmer, C.; White, M.; Ferrer, J.; Whitcher, B.; Artati, A.; Prehn, C.; Adam, J.; Grallert, H.; Gupta, R.; Sackett, P. W.; Nilsson, B.; Tsirigos, K.; Eriksen, R.; Jablonka, B.; Uhlen, M.; Gassenhuber, J.; Baltauss, T.; de Preville, N.; Klintenberg, M.; Abdalla, M. | |
| Discovery of drug-omics associations in type 2 diabetes with generative deep-learning models | 1-gen-2023 | Allesøe, Rosa Lundbye; Lundgaard, Agnete Troen; Hernández Medina, Ricardo; Aguayo-Orozco, Alejandro; Johansen, Joachim; Nissen, Jakob Nybo; Brorsson, Caroline; Mazzoni, Gianluca; Niu, Lili; Biel, Jorge Hernansanz; Brasas, Valentas; Webel, Henry; Benros, Michael Eriksen; Pedersen, Anders Gorm; Chmura, Piotr Jaroslaw; Jacobsen, Ulrik Plesner; Mari, Andrea; Koivula, Robert; Mahajan, Anubha; Vinuela, Ana; Tajes, Juan Fernandez; Sharma, Sapna; Haid, Mark; Hong, Mun Gwan; Musholt, Petra B.; De Masi, Federico; Vogt, Josef; Pedersen, Helle Krogh; Gudmundsdottir, Valborg; Jones, Angus; Kennedy, Gwen; Bell, Jimmy; Thomas, E. Louise; Frost, Gary; Thomsen, Henrik; Hansen, Elizaveta; Hansen, Tue Haldor; Vestergaard, Henrik; Muilwijk, Mirthe; Blom, Marieke T.; 't Hart, Leen M.; Pattou, Francois; Raverdy, Violeta; Brage, Soren; Kokkola, Tarja; Heggie, Alison; Mcevoy, Donna; Mourby, Miranda; Kaye, Jane; Hattersley, Andrew; Mcdonald, Timothy; Ridderstråle, Martin; Walker, Mark; Forgie, Ian; Giordano, Giuseppe N.; Pavo, Imre; Ruetten, Hartmut; Pedersen, Oluf; Hansen, Torben; Dermitzakis, Emmanouil; Franks, Paul W.; Schwenk, Jochen M.; Adamski, Jerzy; Mccarthy, Mark I.; Pearson, Ewan; Banasik, Karina; Rasmussen, Simon; Brunak, Søren; Froguel, Philippe; Thomas, Cecilia Engel; Haussler, Ragna; Beulens, Joline; Rutters, Femke; Nijpels, Giel; van Oort, Sabine; Groeneveld, Lenka; Elders, Petra; Giorgino, Toni; Rodriquez, Marianne; Nice, ; Cristina Leal Rodríguez, Rachel; Perry, Mandy; Bianzano, Susanna; Graefe-Mody, Ulrike; Hennige, Anita; Grempler, Rolf; Baum, Patrick; Stærfeldt, Hans Henrik; Shah, Nisha; Teare, Harriet; Ehrhardt, Beate; Tillner, Joachim; Dings, Christiane; Lehr, Thorsten; Scherer, Nina; Sihinevich, Iryna; Cabrelli, Louise; Loftus, Heather; Bizzotto, Roberto; Tura, Andrea; Dekkers, Koen | |
| Machine learning coarse-grained potentials of protein thermodynamics | 1-gen-2023 | Majewski, Maciej; Pérez, Adrià; Thölke, Philipp; Doerr, Stefan; Charron, Nicholas E.; Giorgino, Toni; Husic, Brooke E.; Clementi, Cecilia; Noe, Frank; De Fabritiis, Gianni | |
| Pharmacogenomics of GLP-1 receptor agonists: a genome-wide analysis of observational data and large randomised controlled trials | 1-gen-2023 | Dawed Adem, Y; Mari, Andrea; Brown, Andrew; McDonald Timothy, J; Li, Lin; Wang, Shuaicheng; Hong Mun, Gwan; Sharma, Sapna; Robertson Neil, R; Mahajan, Anubha; Wang, Xuan; Walker, Mark; Gough, Stephen; Hart Leen, M'T; Zhou, Kaixin; Forgie, Ian; Ruetten, Hartmut; Pavo, Imre; Bhatnagar, Pallav; Jones Angus, G; Pearson Ewan, R; 't Hart, L M; Abdalla, M; Adam, J; Adamski, J; Adragni, K; Allin, K H; Arumugam, M; Atabaki Pasdar, N; Baltauss, T; Banasik, K B; Baum, P; Bell, J D; Bergstrom, M; Beulens, J W; Bianzano, S; Bizzotto, R; Bonneford, A; Brorsson, C AB; Brown, A A; Brunak, S B; Cabrelli, L; Caiazzo, R; Canouil, M; Dale, M; Davtian, D; Dawed Adem, Y; De Masi, F M; de Preville, N; Dekkers, K F; Dermitzakis, E T; Deshmukh, H A; Dings, C; Donnelly, L; Dutta, A; Ehrhardt, B; Elders, P JM; Engel Thomas, C ET; Engelbrechtsen, L; Eriksen, R G; Eriksen, R E; Fan, Y; Fernandez, J; Ferrer, J; Fitipaldi, H; Forgie, Ian; Forman, A; Franks, P W; Frau, F; Fritsche, A; Froguel, P; Frost, G; Gassenhuber, J; Giordano, G N; Giorgino, T; Gough, S; Graefemody, U; Grallert, H; Grempler, R; Groeneveld, L; Groop, L; Gudmundsdóttir, V G; Gupta, R G; Haid, M; Hansen, T; Hansen, T H; Hattersley, A T; Haussler, R S; Heggie, A J; Hennige, A M; Hill, A V; Holl, R W; Hong, M G; Hudson, M; Jablonka, B; Jennison, C; Jiao, J; Johansen, J J; Jones, A G; Jonsson, A | |
| A Prognostic Model to Predict Survival After 6 Months of Ruxolitinib in Patients with Myelofibrosis | 1-gen-2022 | Maffioli Margherita; Mora Barbara; Ball Somedeb; Iurlo Alessandra; Elli Elena Maria; Finazzi Maria Chiara; Polverelli Nicola; Rumi Elisa; Caramella Marianna; Carraro Maria Cristina; D'Adda Mariella; Molteni Alfredo; Sissa Cinzia; Lunghi Francesca; Vismara Alessandro; Ubezio Marta; Guidetti Anna; Caberlon Sabrina; Anghilieri Michela; Komrokji Rami S.; Cattaneo Daniele; Della Porta Matteo Giovanni; Giorgino Toni; Bertù Lorenza; Brociner Marco; Kuykendall Andrew T;Passamonti Francesco | |
| Classification Model for the Second Extracellular Loop of Class A GPCRs | 1-gen-2022 | Nicoli, Alessandro; Dunkel, Andreas; Giorgino, Toni; de Graaf, Chris; Di Pizio, Antonella | |
| Evidence of Covid-19 lockdown effects on riverine dissolved organic matter dynamics provides a proof-of-concept for needed regulations of anthropogenic emissions | 1-gen-2022 | Retelletti Brogi, S.; Cossarini, G.; Bachi, G.; Balestra, C.; Camatti, E.; Casotti, R.; Checcucci, G.; Colella, S.; Evangelista, V.; Falcini, F.; Francocci, F.; Giorgino, T.; Margiotta, F.; Ribera d'Alcalà, M.; Sprovieri, M.; Vestri, S.; Santinelli, C. | |
| Maternal immune activation leads to defective brain-blood vessels and intracerebral hemorrhages in male offspring | 1-gen-2022 | Rasile, Marco; Lauranzano, Eliana; Faggiani, Elisa; Ravanelli Margherita, M; Colombo Federico, S; Mirabella, Filippo; Corradini, Irene; Malosio Maria, L; Borreca, Antonella; Focchi, Elisa; Pozzi, Davide; Giorgino, Toni; Barajon, Isabella; Matteoli, Michela | |
| SCoV2-MD: a database for the dynamics of the SARS-CoV-2 proteome and variant impact predictions | 1-gen-2022 | Torrens-Fontanals, Mariona; Peralta-García, Alejandro; Talarico, Carmine; Guixà-González, Ramon; Giorgino, Toni; Selent, Jana | |
| A novel hotspot of gelsolin instability triggers an alternative mechanism of amyloid aggregation | 1-gen-2021 | Bollati, Michela; Diomede, Luisa; Giorgino, Toni; Natale, Carmina; Fagnani, Elisa; Boniardi, Irene; Barbiroli, Alberto; Alemani, Rebecca; Beeg, Marten; Gobbi, Marco; Fakin, Ana; Mastrangelo, Eloise; MILANI DE MAYO DE MARI, Mario; Presciuttini, Gianluca; Gabellieri, Edi; Cioni, Patrizia; DE ROSA, Matteo | |
| TorchMD: A Deep Learning Framework for Molecular Simulations | 1-gen-2021 | Doerr, Stefan; Majewski, Maciej; Pérez, Adrià; Krämer, Andreas; Clementi, Cecilia; Noe, Frank; Giorgino, Toni; De Fabritiis, Gianni |