ITSoneDB is a comprehensive collection of the fungal ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences aimed at supporting metagenomic surveys of fungal environmental communities. The sequences were extracted from GenBank (GB) and arranged on the NCBI taxonomy tree. ITS1 start and end boundaries were defined by GB annotations and/or designed by mapping Hidden Markov Model (HMM) profiles of flanking 18S and 5.8S ribosomal RNA coding genes on each sequence.
ITSoneDB
Monica Santamaria;Bruno Fosso;Arianna Consiglio;Giorgio De Caro;Giorgio Grillo;Flavio Licciulli;Sabino Liuni;Graziano Pesole
2012
Abstract
ITSoneDB is a comprehensive collection of the fungal ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences aimed at supporting metagenomic surveys of fungal environmental communities. The sequences were extracted from GenBank (GB) and arranged on the NCBI taxonomy tree. ITS1 start and end boundaries were defined by GB annotations and/or designed by mapping Hidden Markov Model (HMM) profiles of flanking 18S and 5.8S ribosomal RNA coding genes on each sequence.File in questo prodotto:
Non ci sono file associati a questo prodotto.
I documenti in IRIS sono protetti da copyright e tutti i diritti sono riservati, salvo diversa indicazione.
