Biological systems are often modelled at different levels of abstraction depending on the particular aims/resources of a study. Such different models often provide qualitatively concordant predictions over specific parametrisations, but it is generally unclear whether model predictions are quantitatively in agreement, and whether such agreement holds for different parametrisations. Here we present a generally applicable statistical machine learning methodology to automatically reconcile the predictions of different models across abstraction levels. Our approach is based on defining a correction map, a random function which modifies the output of a model in order to match the statistics of the output of a different model of the same system. We use two biological examples to give a proof-of-principle demonstration of the methodology, and discuss its advantages and potential further applications.

Matching models across abstraction levels with Gaussian processes

Bortolussi L;
2016

Abstract

Biological systems are often modelled at different levels of abstraction depending on the particular aims/resources of a study. Such different models often provide qualitatively concordant predictions over specific parametrisations, but it is generally unclear whether model predictions are quantitatively in agreement, and whether such agreement holds for different parametrisations. Here we present a generally applicable statistical machine learning methodology to automatically reconcile the predictions of different models across abstraction levels. Our approach is based on defining a correction map, a random function which modifies the output of a model in order to match the statistics of the output of a different model of the same system. We use two biological examples to give a proof-of-principle demonstration of the methodology, and discuss its advantages and potential further applications.
2016
Istituto di Scienza e Tecnologie dell'Informazione "Alessandro Faedo" - ISTI
Inglese
Bartocci E., Lio P., Paoletti N.
Computational Methods in Systems Biology. CMSB 2016. Lecture Notes in Computer Science
14th Conference on Computational Methods in Systems Biology, CMSB 2016
49
66
978-3-319-45176-3
https://link.springer.com/chapter/10.1007/978-3-319-45177-0_4
Sì, ma tipo non specificato
21-23 September, 2016
Cambridge, United Kingdom
Computational abstraction
EmulationGaussian Processes
Heteroschedasticity
0
partially_open
Caravagna G.; Bortolussi L.; Sanguinetti G.
273
info:eu-repo/semantics/conferenceObject
04 Contributo in convegno::04.01 Contributo in Atti di convegno
   A Quantitative Approach to Management and Design of Collective and Adaptive Behaviours
   QUANTICOL
   FP7
   600708
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/20.500.14243/409534
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