CUMBO, FABIO
CUMBO, FABIO
Istituto di Analisi dei Sistemi ed Informatica ''Antonio Ruberti'' - IASI
The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update
2024 L Abueg, Linelle Ann; Afgan, Enis; Allart, Olivier; H Awan, Ahmed; A Bacon, Wendi; Baker, Dannon; Bassetti, Madeline; Batut, Bérénice; Bernt, Matthias; Blankenberg, Daniel; Bombarely, Aureliano; Bretaudeau, Anthony; J Bromhead, Catherine; L Burke, Melissa; K Capon, Patrick; Čech, Martin; Chavero-Díez, María; M Chilton, John; J Collins, Tyler; Coppens, Frederik; Coraor, Nate; Cuccuru, Gianmauro; Cumbo, Fabio; Davis, John; F De Geest, Paul; de Koning, Willem; Demko, Martin; Desanto, Assunta; Manuel Domínguez Begines, José; A Doyle, Maria; Droesbeke, Bert; Erxleben-Eggenhofer, Anika; C Föll, Melanie; Formenti, Giulio; Fouilloux, Anne; Gangazhe, Rendani; Genthon, Tanguy; Goecks, Jeremy; N Gonzalez Beltran, Alejandra; A Goonasekera, Nuwan; Goué, Nadia; J Griffin, Timothy; A Grüning, Björn; Guerler, Aysam; Gundersen, Sveinung; Johan Ragnar Gustafsson, Ove; Hall, Christina; W Harrop, Thomas; Hecht, Helge; Heidari, Alireza; Heisner, Tillman; Heyl, Florian; Hiltemann, Saskia; Hotz, Hans-Rudolf; J Hyde, Cameron; D Jagtap, Pratik; Jakiela, Julia; E Johnson, James; Joshi, Jayadev; Jossé, Marie; Jum’Ah, Khaled; Kalaš, Matúš; Kamieniecka, Katarzyna; Kayikcioglu, Tunc; Konkol, Markus; Kostrykin, Leonid; Kucher, Natalie; Kumar, Anup; Kuntz, Mira; Lariviere, Delphine; Lazarus, Ross; Le Bras, Yvan; Le Corguillé, Gildas; Lee, Justin; Leo, Simone; Liborio, Leandro; Libouban, Romane; López Tabernero, David; Lopez-Delisle, Lucille; S Los, Laila; Mahmoud, Alexandru; Makunin, Igor; Marin, Pierre; Mehta, Subina; Mok, Winnie; A Moreno, Pablo; Morier-Genoud, François; Mosher, Stephen; Müller, Teresa; Nasr, Engy; Nekrutenko, Anton; M Nelson, Tiffanie; J Oba, Asime; Ostrovsky, Alexander; V Polunina, Polina; Poterlowicz, Krzysztof; J Price, Elliott; R Price, Gareth; Rasche, Helena; Raubenolt, Bryan; Royaux, Coline; Sargent, Luke; T Savage, Michelle; Savchenko, Volodymyr; Savchenko, Denys; C Schatz, Michael; Seguineau, Pauline; Serrano-Solano, Beatriz; Soranzo, Nicola; Kumar Srikakulam, Sanjay; Suderman, Keith; E Syme, Anna; Tangaro, MARCO ANTONIO; A Tedds, Jonathan; Tekman, Mehmet; Cheng (Mike) Thang, Wai; S Thanki, Anil; Uhl, Michael; van den Beek, Marius; Varshney, Deepti; Vessio, Jenn; Videm, Pavankumar; Von Kuster, Greg; R Watson, Gregory; Whitaker-Allen, Natalie; Winter, Uwe; Wolstencroft, Martin; Zambelli, Federico; Zierep, Paul; Zoabi, Rand
An ontology-based approach for modelling and querying Alzheimer's disease data
2023 Taglino, Francesco; Cumbo, Fabio; Antognoli, Giulia; Arisi, Ivan; D'Onofrio, Mara; Perazzoni, Federico; Voyat, Roger; Fiscon, Giulia; Conte, Federica; Canevelli, Marco; Bruno, Giuseppe; Mecocci, Patrizia; Bertolazzi, Paola
La banca dati AMINAVI: conoscere la presenza di amianto a bordo delle navi, nel passato e nel presente. The AMINAVI database: knowing the presence of asbestos on board ships, in the past and in the present
2020 Fiumi, Lorenza; Cumbo, Fabio; Crenca, Cinzia; Gallo, Dario; Meoni, Carlo
AMINAVI
2019 Fiumi, Lorenza; Cumbo, Fabio; Crenca, Cinzia; Gallo, Dario; Meoni, Carlo
Combining knowledge-based approach with logic data mining techniques to improve data querying and analysis on Alzheimer's Disease data
2019 Antognoli, Giulia; Arisi, Ivan; Bertolazzi, Paola; Cappelli, Eleonora; Conte, Federica; Cumbo, Fabio; Fiscon, Giulia; Mavelli, Gabriella; Perazzoni, Federico; Sonnessa, Michele; Taglino, Francesco; Voyat, Roger
Extending knowledge on genomic data and metadata of cancer by exploiting taxonomy-based relaxed queries on domain-specific ontologies
2019 Cappelli, Eleonora; Weitschek, Emanuel; Cumbo, Fabio
GMS Gammadiae Management System : cataloguing and interpretation project of the so-called gammadiae starting from the iconographic evidences in the Roman catacombs
2019 Cumbo, Cristina; Cumbo, Fabio
Smart persistence and accessibility of genomic and clinical data
2019 Cappelli, E; Weitschek, E; Cumbo, F
The AMINAVI database: Know the presence of asbestos on board ships, in the past and in the present
2019 Fiumi, Lorenza; Cumbo, Fabio; Crenca, Cinzia; Gallo, Dario; Meoni, Carlo
An ontology-based approach to improve data querying and organization of Alzheimer's Disease data
2018 Arisi, Ivan; Bertolazzi, Paola; Cappelli, Eleonora; Conte, Federica; Cumbo, Fabio; Fiscon, Giulia; Sonnessa, Michele; Taglino, Francesco
Classification of Large DNA Methylation Datasets for Identifying Cancer Drivers
2018 Celli, Fabrizio; Cumbo, Fabio; Weitschek, Emanuel
Classifying big DNA methylation data: A gene-oriented approach
2018 Weitschek, Emanuel; Cumbo, Fabio; Cappelli, Eleonora; Felici, Giovanni; Bertolazzi, Paola
Investigating transcription factor synergism in humans.
2018 Cumbo, Fabio; Vergni, Davide; Santoni, Daniele
IWTomics: Testing high-resolution sequence-based 'Omics' data at multiple locations and scales
2018 Cremona, Marzia A.; Pini, Alessia; Cumbo, Fabio; Makova, Kateryna D.; Chiaromonte, Francesca; Vantini, Simone
OpenGDC: standardizing, extending, and integrating genomics data of cancer
2018 Cappelli, Eleonora; Cumbo, Fabio; Bernasconi, Anna; Masseroli, Marco; Weitschek, Emanuel
COSYS: A computational infrastructure for systems biology
2017 Cumbo F.; Nobile M.S.; Damiani C.; Colombo R.; Mauri G.; Cazzaniga P.
IRIS-TCGA: An information retrieval and integration system for genomic data of cancer
2017 Cumbo, Fabio; Cumbo, Fabio; Weitschek, Emanuel; Weitschek, Emanuel; Bertolazzi, Paola; Felici, Giovanni
TCGA2BED: Extracting, extending, integrating, and querying The Cancer Genome Atlas
2017 Cumbo, F; Fiscon, G; Ceri, S; Masseroli, M; Weitschek, E
Genomic Data Integration: A Case Study on Next Generation Sequencing of Cancer
2016 Weitschek, E; Cumbo, F; Cappelli, E; Felici, G
Time dynamics of protein complexes in the AD11 transgenic mouse model for Alzheimer's disease like pathology
2015 Arisi I.; D'Onofrio M.; Brandi R.; Cattaneo A.; Bertolazzi P.; Cumbo F.; Felici G.; Guerra C.
| Titolo | Data di pubblicazione | Autore(i) | File |
|---|---|---|---|
| The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update | 1-gen-2024 | L Abueg, Linelle Ann; Afgan, Enis; Allart, Olivier; H Awan, Ahmed; A Bacon, Wendi; Baker, Dannon; Bassetti, Madeline; Batut, Bérénice; Bernt, Matthias; Blankenberg, Daniel; Bombarely, Aureliano; Bretaudeau, Anthony; J Bromhead, Catherine; L Burke, Melissa; K Capon, Patrick; Čech, Martin; Chavero-Díez, María; M Chilton, John; J Collins, Tyler; Coppens, Frederik; Coraor, Nate; Cuccuru, Gianmauro; Cumbo, Fabio; Davis, John; F De Geest, Paul; de Koning, Willem; Demko, Martin; Desanto, Assunta; Manuel Domínguez Begines, José; A Doyle, Maria; Droesbeke, Bert; Erxleben-Eggenhofer, Anika; C Föll, Melanie; Formenti, Giulio; Fouilloux, Anne; Gangazhe, Rendani; Genthon, Tanguy; Goecks, Jeremy; N Gonzalez Beltran, Alejandra; A Goonasekera, Nuwan; Goué, Nadia; J Griffin, Timothy; A Grüning, Björn; Guerler, Aysam; Gundersen, Sveinung; Johan Ragnar Gustafsson, Ove; Hall, Christina; W Harrop, Thomas; Hecht, Helge; Heidari, Alireza; Heisner, Tillman; Heyl, Florian; Hiltemann, Saskia; Hotz, Hans-Rudolf; J Hyde, Cameron; D Jagtap, Pratik; Jakiela, Julia; E Johnson, James; Joshi, Jayadev; Jossé, Marie; Jum’Ah, Khaled; Kalaš, Matúš; Kamieniecka, Katarzyna; Kayikcioglu, Tunc; Konkol, Markus; Kostrykin, Leonid; Kucher, Natalie; Kumar, Anup; Kuntz, Mira; Lariviere, Delphine; Lazarus, Ross; Le Bras, Yvan; Le Corguillé, Gildas; Lee, Justin; Leo, Simone; Liborio, Leandro; Libouban, Romane; López Tabernero, David; Lopez-Delisle, Lucille; S Los, Laila; Mahmoud, Alexandru; Makunin, Igor; Marin, Pierre; Mehta, Subina; Mok, Winnie; A Moreno, Pablo; Morier-Genoud, François; Mosher, Stephen; Müller, Teresa; Nasr, Engy; Nekrutenko, Anton; M Nelson, Tiffanie; J Oba, Asime; Ostrovsky, Alexander; V Polunina, Polina; Poterlowicz, Krzysztof; J Price, Elliott; R Price, Gareth; Rasche, Helena; Raubenolt, Bryan; Royaux, Coline; Sargent, Luke; T Savage, Michelle; Savchenko, Volodymyr; Savchenko, Denys; C Schatz, Michael; Seguineau, Pauline; Serrano-Solano, Beatriz; Soranzo, Nicola; Kumar Srikakulam, Sanjay; Suderman, Keith; E Syme, Anna; Tangaro, MARCO ANTONIO; A Tedds, Jonathan; Tekman, Mehmet; Cheng (Mike) Thang, Wai; S Thanki, Anil; Uhl, Michael; van den Beek, Marius; Varshney, Deepti; Vessio, Jenn; Videm, Pavankumar; Von Kuster, Greg; R Watson, Gregory; Whitaker-Allen, Natalie; Winter, Uwe; Wolstencroft, Martin; Zambelli, Federico; Zierep, Paul; Zoabi, Rand | |
| An ontology-based approach for modelling and querying Alzheimer's disease data | 1-gen-2023 | Taglino, Francesco; Cumbo, Fabio; Antognoli, Giulia; Arisi, Ivan; D'Onofrio, Mara; Perazzoni, Federico; Voyat, Roger; Fiscon, Giulia; Conte, Federica; Canevelli, Marco; Bruno, Giuseppe; Mecocci, Patrizia; Bertolazzi, Paola | |
| La banca dati AMINAVI: conoscere la presenza di amianto a bordo delle navi, nel passato e nel presente. The AMINAVI database: knowing the presence of asbestos on board ships, in the past and in the present | 1-gen-2020 | Fiumi, Lorenza; Cumbo, Fabio; Crenca, Cinzia; Gallo, Dario; Meoni, Carlo | |
| AMINAVI | 1-gen-2019 | Fiumi, Lorenza; Cumbo, Fabio; Crenca, Cinzia; Gallo, Dario; Meoni, Carlo | |
| Combining knowledge-based approach with logic data mining techniques to improve data querying and analysis on Alzheimer's Disease data | 1-gen-2019 | Antognoli, Giulia; Arisi, Ivan; Bertolazzi, Paola; Cappelli, Eleonora; Conte, Federica; Cumbo, Fabio; Fiscon, Giulia; Mavelli, Gabriella; Perazzoni, Federico; Sonnessa, Michele; Taglino, Francesco; Voyat, Roger | |
| Extending knowledge on genomic data and metadata of cancer by exploiting taxonomy-based relaxed queries on domain-specific ontologies | 1-gen-2019 | Cappelli, Eleonora; Weitschek, Emanuel; Cumbo, Fabio | |
| GMS Gammadiae Management System : cataloguing and interpretation project of the so-called gammadiae starting from the iconographic evidences in the Roman catacombs | 1-gen-2019 | Cumbo, Cristina; Cumbo, Fabio | |
| Smart persistence and accessibility of genomic and clinical data | 1-gen-2019 | Cappelli, E; Weitschek, E; Cumbo, F | |
| The AMINAVI database: Know the presence of asbestos on board ships, in the past and in the present | 1-gen-2019 | Fiumi, Lorenza; Cumbo, Fabio; Crenca, Cinzia; Gallo, Dario; Meoni, Carlo | |
| An ontology-based approach to improve data querying and organization of Alzheimer's Disease data | 1-gen-2018 | Arisi, Ivan; Bertolazzi, Paola; Cappelli, Eleonora; Conte, Federica; Cumbo, Fabio; Fiscon, Giulia; Sonnessa, Michele; Taglino, Francesco | |
| Classification of Large DNA Methylation Datasets for Identifying Cancer Drivers | 1-gen-2018 | Celli, Fabrizio; Cumbo, Fabio; Weitschek, Emanuel | |
| Classifying big DNA methylation data: A gene-oriented approach | 1-gen-2018 | Weitschek, Emanuel; Cumbo, Fabio; Cappelli, Eleonora; Felici, Giovanni; Bertolazzi, Paola | |
| Investigating transcription factor synergism in humans. | 1-gen-2018 | Cumbo, Fabio; Vergni, Davide; Santoni, Daniele | |
| IWTomics: Testing high-resolution sequence-based 'Omics' data at multiple locations and scales | 1-gen-2018 | Cremona, Marzia A.; Pini, Alessia; Cumbo, Fabio; Makova, Kateryna D.; Chiaromonte, Francesca; Vantini, Simone | |
| OpenGDC: standardizing, extending, and integrating genomics data of cancer | 1-gen-2018 | Cappelli, Eleonora; Cumbo, Fabio; Bernasconi, Anna; Masseroli, Marco; Weitschek, Emanuel | |
| COSYS: A computational infrastructure for systems biology | 1-gen-2017 | Cumbo F.; Nobile M.S.; Damiani C.; Colombo R.; Mauri G.; Cazzaniga P. | |
| IRIS-TCGA: An information retrieval and integration system for genomic data of cancer | 1-gen-2017 | Cumbo, Fabio; Cumbo, Fabio; Weitschek, Emanuel; Weitschek, Emanuel; Bertolazzi, Paola; Felici, Giovanni | |
| TCGA2BED: Extracting, extending, integrating, and querying The Cancer Genome Atlas | 1-gen-2017 | Cumbo, F; Fiscon, G; Ceri, S; Masseroli, M; Weitschek, E | |
| Genomic Data Integration: A Case Study on Next Generation Sequencing of Cancer | 1-gen-2016 | Weitschek, E; Cumbo, F; Cappelli, E; Felici, G | |
| Time dynamics of protein complexes in the AD11 transgenic mouse model for Alzheimer's disease like pathology | 1-gen-2015 | Arisi I.; D'Onofrio M.; Brandi R.; Cattaneo A.; Bertolazzi P.; Cumbo F.; Felici G.; Guerra C. |