Deep learning neural networks are capable to extract significant features from raw data, and to use these features for classification tasks. In this work we present a deep learning neural network for DNA sequence classification based on spectral sequence representation. The framework is tested on a dataset of 3000 16S genes and compared to the GRNN that we tested outperform the Support Vector Machine classification algorithm.

A deep learning approach to DNA sequence classification: first results

Riccardo Rizzo;Antonino Fiannaca;Massimo La Rosa;Alfonso Urso
2015

Abstract

Deep learning neural networks are capable to extract significant features from raw data, and to use these features for classification tasks. In this work we present a deep learning neural network for DNA sequence classification based on spectral sequence representation. The framework is tested on a dataset of 3000 16S genes and compared to the GRNN that we tested outperform the Support Vector Machine classification algorithm.
2015
Istituto di Calcolo e Reti ad Alte Prestazioni - ICAR
Inglese
12th International Meeting on Computational Intelligence Methods for Bioinformatics and Biostatistics (CIBB 2015)
6
9788890643798
Sì, ma tipo non specificato
September, 10-12, 2015
Naples, Italy
Convolutional Network
Deep Learning
Artificial Neural Network
Spectral Sequence Representation
K-mers representation
4
none
Riccardo Rizzo; Antonino Fiannaca; Massimo La Rosa; Alfonso Urso
273
info:eu-repo/semantics/conferenceObject
04 Contributo in convegno::04.01 Contributo in Atti di convegno
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/20.500.14243/302587
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