SANTONI, DANIELE
SANTONI, DANIELE
Istituto di Analisi dei Sistemi ed Informatica ''Antonio Ruberti'' - IASI
An Integer Linear Programming Model to Optimize Coding DNA Sequences By Joint Control of Transcript Indicators
2024 Arbib, Claudio; D'Ascenzo, Andrea; Rossi, Fabrizio; Santoni, Daniele
Network homophily via tail inequalities
2023 Apollonio Nicola; Franciosa; Paolo G.; Santoni Daniele
Peptide Hamming Graphs: A network representation of peptides presented through specific HLAs to identify potential epitope clusters
2023 Santoni D.
Transcription Factor Driven Gene Regulation in COVID-19 Patients
2023 Santoni, Daniele; Ghosh, Nimisha; Derelitto, Carlo; Saha, Indrajit
TRANSPARENT: a Python tool for designing transcription factor regulatory networks
2023 Derelitto, Carlo; Santoni, Daniele
A novel method for assessing and measuring homophily in networks through second-order statistics
2022 Apollonio, N; Franciosa, Pg; Santoni, D
An Entropy-based study on Mutational Trajectory of SARS-CoV-2 in India
2022 santoni daniele; gosh; nimisha;Saha Indrajit
An immunological glimpse of human virus peptides: Distance from self, MHC class I binding, proteasome cleveage, TAP transport and sequence composition entropy
2022 Santoni, D; Felici, G
Evaluating homophily in networks via HONTO (HOmophily Network TOol): a case study of chromosomal interactions in human PPI networks
2022 Nicola Apollonio; Daniel Blankenberg; Fabio Cumbo; Paolo Giulio Franciosa; Daniele Santoni
Evaluation of HIV-1 integrase variability by combining computational and probabilistic approaches
2022 Vergni, Davide; Santoni, Daniele; Bouba, Yagai; Lemme, Saverio; Fabeni, Lavinia; Carioti, Luca; Bertoli, Ada; Gennari, William; Forbici, Federica; Federico Perno, Carlo; Gagliardin, Roberta; Ceccherinisilberstein, Francesca; Mercedes Santoro, Maria; behalf of the HIV drugresistance group, On
A genome-wide study on differential methylation in different cancers using TCGA database
2021 Santoni, D; Pignotti, D; Vergni, D
On function homophily of microbial Protein-Protein Interaction Networks.
2021 Nicola Apollonio; Paolo Giulio Franciosa; Daniele Santoni
The impact of codon choice on translation process in Saccharomyces cerevisiae: folding class, protein function and secondary structure
2021 Santoni, D
The impact of flanking sequence features on DNA CpG methylation
2021 Santoni, D
In the search of potential epitopes for Wuhan seafood market pneumonia virus using high order nullomers
2020 Santoni D.; Vergni D.
The farther the better: investigating how distance from human self affects the propensity of a peptide to be presented on cell surface by MHC class I molecules, the case of Trypanosoma cruzi.
2020 Vergni, Davide; Gaudio, Rosanna; Santoni, Daniele
A Machine Learning Approach for Disease Genes Signatures
2019 Longo, Annalisa; Pochiraju, Venkata; Santoni, Daniele; Vergni, Davide; Tieri, Paolo
A study of the impact of DNA helical rise on protein-DNA interaction
2019 Pedone, F; Mazzei, F; Santoni, Daniele; D,
Vincitori StartCup Lazio
2019 Soligo, Marzia; Manni, Luigi; Castiglione, Filippo; Tieri, Paolo; Vergni, Davide; Adamo, Massimiliano; Santoni, Daniele; Chiaretti, Antonio
A Content-Based Retrieval Framework for Whole Metagenome Sequencing Samples
2018 Duygu Dede ener; Daniele Santoni; Giovanni Felici;Hasan Oul